MmuEX6101689 @ mm9
Exon Skipping
Gene
ENSMUSG00000057182 | Scn3a
Description
sodium channel, voltage-gated, type III, alpha [Source:MGI Symbol;Acc:MGI:98249]
Coordinates
chr2:65322403-65333453:-
Coord C1 exon
chr2:65332980-65333453
Coord A exon
chr2:65328818-65328909
Coord C2 exon
chr2:65322403-65322523
Length
92 bp
Sequences
Splice sites
3' ss Seq
ACCATTCTTACTTCTCACAGGGT
3' ss Score
8.49
5' ss Seq
CAAGCAAGT
5' ss Score
2.32
Exon sequences
Seq C1 exon
GTTCTGAACCTCTTCCTGGCCTTATTGTTGAGTTCCTTTAGTTCAGACAACCTTGCTGCTACGGACGATGATAACGAAATGAACAACCTCCAGATCGCGGTGGGAAGGATGCAAAAGGGGATTGATTATGTGAAAAATAAGATACGGGAGTGCTTCCGAAAAGCGTTTTTTAGAAAGCCGAAAGTGATAGAAATCCACGAAGGGAACAAAATAGACAGCTGCATGTCCAATAACACGGGCGTAGTTGAAATAAGCAAAGAGCTTAACTACCTTAAAGACGGTAACGGAACCACCAGTGGCGTGGGTACTGGAAGCAGTGTGGAGAAATACGTAATTGATGAAAATGACTACATGTCATTCATCAACAACCCCAGCCTCACCGTGACGGTGCCAATTGCCGTGGGAGAGTCTGACTTTGAAAATTTAAACACGGAAGAGTTTAGCAGTGAGTCAGAACTGGAAGAAAGCAAGGAG
Seq A exon
GGTGAGACCAAGCTGGCGCCATCAAGAATGCCACTCTGGTGTCTTTTAAGCAGCCACAGGCTCGAGCCACCACTTTTACCCAGGTTACCCAA
Seq C2 exon
AAATTAAATGCAACCAGCTCTTCTGAAGGAAGCACAGTTGACGTTGCTCCGCCCCGAGAAGGTGAACAAGCTGAAATTGAACCTGAGGAGGACCTTAAGCCAGAAGCTTGCTTTACTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057182-'24-25,'24-23,27-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.122 A=0.097 C2=0.689
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(4.2=5.1),PF065128=Na_trans_assoc=PU(60.9=84.8)
A:
PF065128=Na_trans_assoc=PD(8.8=32.3)
C2:
PF065128=Na_trans_assoc=FE(18.2=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTGCCGTGGGAGAGTCTGA
R:
GGCTTAAGGTCCTCCTCAGGT
Band lengths:
183-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: