Special

ENSMUSG00000057182 @ mm9

Biotype
protein_coding
Gene Symbol
Scn3a
Description
sodium channel, voltage-gated, type III, alpha [Source:MGI Symbol;Acc:MGI:98249]
Coordinates
chr2:65295175-65405684:-
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 5'ss
0
NA
-
56.65
44.79
0
Alternative 5'ss
9
chr2:65346510-65346518
-
18.31
18.71
0
Alternative 5'ss
96
chr2:65346423-65346518
-
25.04
49.1
0
Exon Skipping
92
chr2:65363934-65364025
-
59.13
89.75
0
Exon Skipping
92
chr2:65363752-65363843
-
49.71
95.98
0
Intron Retention
10456
chr2:65322524-65332979
-
10.63
30.19
0
Intron Retention
710
chr2:65363844-65364553
-
30.42
31.97
0
Intron Retention
818
chr2:65362934-65363751
-
40.91
53.85
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000153253 SCN3A 1-to-1
Human hg19 ENSG00000153253 SCN3A 1-to-1
Rat rn6 ENSRNOG00000005007 Scn3a 1-to-1
Cow bosTau6 ENSBTAG00000019385 SCN3A 1-to-1
Chicken galGal4 ENSGALG00000011040 SCN3A 1-to-1
Chicken galGal3 ENSGALG00000011040 1-to-1
Zebrafish danRer10 ENSDARG00000062744 scn1lab 5-to-2
Zebrafish danRer10 ENSDARG00000086819 scn1a 5-to-2
Fruitfly dm6 FBgn0264255 para 10-to-1