Special

ENSMUSG00000057182 @ mm10

Biotype
protein_coding
Gene Symbol
Scn3a
Description
sodium channel, voltage-gated, type III, alpha [Source:MGI Symbol;Acc:MGI:98249]
Coordinates
chr2:65457118-65567627:-
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 5'ss
0
NA
-
42.12
46.03
0
Alternative 5'ss
13
chr2:65508449-65508461
-
13.88
37.44
0
Alternative 5'ss
96
chr2:65508366-65508461
-
18.23
38.98
0
Alternative 5'ss
147
chr2:65508315-65508461
-
12.27
32.77
0
Exon Skipping
92
chr2:65525877-65525968
-
52.52
93.93
0
Exon Skipping
92
chr2:65525695-65525786
-
49.69
96.21
0
Exon Skipping
28
chr2:65487854-65487881
-
3.08
19.46
0
Intron Retention
10456
chr2:65484467-65494922
-
10.14
30.19
0
Intron Retention
710
chr2:65525787-65526496
-
30.42
31.97
0
Intron Retention
818
chr2:65524877-65525694
-
40.91
53.85
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000153253 SCN3A 1-to-1
Human hg19 ENSG00000153253 SCN3A 1-to-1
Rat rn6 ENSRNOG00000005007 Scn3a 1-to-1
Cow bosTau6 ENSBTAG00000019385 SCN3A 1-to-1
Chicken galGal4 ENSGALG00000011040 SCN3A 1-to-1
Chicken galGal3 ENSGALG00000011040 1-to-1
Zebrafish danRer10 ENSDARG00000062744 scn1lab 5-to-2
Zebrafish danRer10 ENSDARG00000086819 scn1a 5-to-2
Fruitfly dm6 FBgn0264255 para 10-to-1