Special

ENSG00000153253 @ hg19

Biotype
protein_coding
Gene Symbol
SCN3A
Description
sodium channel, voltage-gated, type III, alpha subunit [Source:HGNC Symbol;Acc:10590]
Coordinates
chr2:165944032-166060577:-
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 5'ss
0
NA
-
69.97
38.1
0
Alternative 5'ss
147
chr2:165997161-165997307
-
30.03
38.1
0
Exon Skipping
140
chr2:166036062-166036201
-
25.05
33.85
0
Exon Skipping
92
chr2:166020312-166020403
-
38.47
59.15
0
Exon Skipping
92
chr2:166020128-166020219
-
70.25
57.33
0
Intron Retention
12055
chr2:165972086-165984140
-
10.29
20.58
0
Intron Retention
2777
chr2:165954035-165956811
-
17.83
43.97
0
Intron Retention
682
chr2:166020220-166020901
-
18.19
52.93
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Mouse mm10 ENSMUSG00000057182 Scn3a 1-to-1
Mouse mm9 ENSMUSG00000057182 Scn3a 1-to-1
Rat rn6 ENSRNOG00000005007 Scn3a 1-to-1
Cow bosTau6 ENSBTAG00000019385 SCN3A 1-to-1
Chicken galGal4 ENSGALG00000011040 SCN3A 1-to-1
Chicken galGal3 ENSGALG00000011040 1-to-1
Zebrafish danRer10 ENSDARG00000062744 scn1lab 5-to-2
Zebrafish danRer10 ENSDARG00000086819 scn1a 5-to-2
Fruitfly dm6 FBgn0264255 para 10-to-1