MmuEX0041267 @ mm10
Exon Skipping
Gene
ENSMUSG00000057182 | Scn3a
Description
sodium channel, voltage-gated, type III, alpha [Source:MGI Symbol;Acc:MGI:98249]
Coordinates
chr2:65524604-65526625:-
Coord C1 exon
chr2:65526497-65526625
Coord A exon
chr2:65525877-65525968
Coord C2 exon
chr2:65524604-65524876
Length
92 bp
Sequences
Splice sites
3' ss Seq
ACTCTGATTTAATCCTACAGGTA
3' ss Score
9.61
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GTACACATTCACTGGGATCTATACCTTTGAGTCACTTATAAAGATCTTGGCCAGAGGATTCTGCTTAGAAGATTTCACATTTCTTCGTGACCCATGGAACTGGCTGGATTTCAGTGTCATCGTGATGGC
Seq A exon
GTATGTAACAGAATTTGTAAGCCTAGGCAATGTTTCAGCTCTTCGAACTTTCAGAGTCTTGCGAGCTCTGAAAACTATTTCTGTAATTCCAG
Seq C2 exon
GTTTAAAGACCATCGTGGGGGCCCTGATCCAGTCGGTGAAGAAGCTGTCTGACGTCATGATACTCACTGTGTTCTGTCTGAGCGTCTTTGCTCTCATCGGGCTGCAGCTCTTCATGGGCAACCTGAGGAATAAATGCTTGCAGTGGCCTCCAAGCGATTCTGCTTTTGAGATCAACACTACTTCCTACTTCAATGGCACAATGGACTCAAATGGGACATTTGTTAATGTAACAATGAGCACATTCAACTGGAAGGACTATATCGCAGATGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057182-'7-11,'7-8,8-11
Average complexity
ME(1-2[98=100])
Mappability confidence:
100%=100=83%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(16.0=100)
A:
PF0052026=Ion_trans=FE(25.2=100)
C2:
PF0052026=Ion_trans=FE(34.0=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCGTGACCCATGGAACTGG
R:
TCCTCAGGTTGCCCATGAAGA
Band lengths:
176-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types