GgaEX0028861 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr7:21395468-21397576:+
Coord C1 exon
chr7:21395468-21395596
Coord A exon
chr7:21396103-21396194
Coord C2 exon
chr7:21397304-21397576
Length
92 bp
Sequences
Splice sites
3' ss Seq
ACTGTGATTTAATCCTACAGGTA
3' ss Score
9.97
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GTACACTTTCACTGGAATTTATACCTTTGAATCACTGATAAAAATTCTTGCAAGGGGCTTCTGCTTAGAAGGTTTTACTTTTCTGCGAGACCCATGGAACTGGCTTGACTTCAGTGTCATTCTAATGGC
Seq A exon
GTATGTAACAGAATTTGTAAACCTAGGCAATGTTTCAGCTCTTCGAACTTTCAGAGTATTGAGAGCTTTGAAAACTATTTCTGTAATCCCAG
Seq C2 exon
GCCTAAAGACTATTGTAGGAGCCCTAATTCAGTCTGTGAAGAAGCTCTCGGATGTTATGATCCTGACTGTGTTTTGTCTGAGTGTATTTGCACTAATAGGGCTGCAGCTGTTCATGGGCAACTTGAGGAATAAATGCCTGCAGTGGCCTCCAGACAATTCTACTTTTGAAATAAATGTTATTTCCTACTTTAATAGCACAATGGATGAAAATGGTACATTTATTAATACAACTGTGAGCACATTTAACTGGAAGGATTACATCGAGGATGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011040_MULTIEX1-1/3=C1-3
Average complexity
ME(1-2[96=100])
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(16.0=100)
A:
PF0052026=Ion_trans=FE(11.6=100)
C2:
PF0052026=Ion_trans=FE(34.0=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACCCATGGAACTGGCTTG
R:
TCAAGTTGCCCATGAACAGCT
Band lengths:
169-261
Functional annotations
There are 0 annotated functions for this event