GgaEX0028861 @ galGal4
Exon Skipping
Gene
ENSGALG00000011040 | SCN3A
Description
sodium channel, voltage gated, type III alpha subunit [Source:HGNC Symbol;Acc:HGNC:10590]
Coordinates
chr7:19415980-19418088:+
Coord C1 exon
chr7:19415980-19416108
Coord A exon
chr7:19416615-19416706
Coord C2 exon
chr7:19417816-19418088
Length
92 bp
Sequences
Splice sites
3' ss Seq
ACTGTGATTTAATCCTACAGGTA
3' ss Score
9.97
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GTACACTTTCACTGGAATTTATACCTTTGAATCACTGATAAAAATTCTTGCAAGGGGCTTCTGCTTAGAAGGTTTTACTTTTCTGCGAGACCCATGGAACTGGCTTGACTTCAGTGTCATTCTAATGGC
Seq A exon
GTATGTAACAGAATTTGTAAACCTAGGCAATGTTTCAGCTCTTCGAACTTTCAGAGTATTGAGAGCTTTGAAAACTATTTCTGTAATCCCAG
Seq C2 exon
GCCTAAAGACTATTGTAGGAGCCCTAATTCAGTCTGTGAAGAAGCTCTCGGATGTTATGATCCTGACTGTGTTTTGTCTGAGTGTATTTGCACTAATAGGGCTGCAGCTGTTCATGGGCAACTTGAGGAATAAATGCCTGCAGTGGCCTCCAGACAATTCTACTTTTGAAATAAATGTTATTTCCTACTTTAATAGCACAATGGATGAAAATGGTACATTTATTAATACAACTGTGAGCACATTTAACTGGAAGGATTACATCGAGGATGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011040-'3-6,'3-4,4-6
Average complexity
C2
Mappability confidence:
100%=75=60%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(16.0=100)
A:
PF0052026=Ion_trans=FE(11.6=100)
C2:
PF0052026=Ion_trans=FE(34.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACCCATGGAACTGGCTTG
R:
TCAAGTTGCCCATGAACAGCT
Band lengths:
169-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]