MmuEX6102198 @ mm10
Exon Skipping
Gene
ENSMUSG00000075284 | Wipf1
Description
WAS/WASL interacting protein family, member 1 [Source:MGI Symbol;Acc:MGI:2178801]
Coordinates
chr2:73447849-73529734:-
Coord C1 exon
chr2:73529327-73529734
Coord A exon
chr2:73510943-73511011
Coord C2 exon
chr2:73447849-73447937
Length
69 bp
Sequences
Splice sites
3' ss Seq
TCTTGTGGATGTTTTGGCAGATA
3' ss Score
6.23
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
CCCACTCGGAGGCCCGGGTAGTTTCTAGGGACAGCGTCTTGGGTTGGGTATCCCTTCCAGGTCCGGCTCCTGGGCGCACGCAGGTCCGGACCCCTCGGCCTCCGCCCCGGGGAGAGCCCAGCCCAGGCTCCGGTCCCGCCGGCCTCGGAAGTCAGGGCGCGGCGAGGGCGAAGGGCGAAGGGCCAGCGGCTGCCTCGGCGTCCGCGTGTGGCGGGGGCCGTAGGGGGAGGACGCGGGCCGAGGGGGAGGGCGCACATCTCGGCGAAGTTCCCGGATGGTCGCAGCCTCCCGGCGCGGAGCGCTTTTCCTGCCCGCCCCGGCTCAGCCCTGCGGACCCAGAGAGAAGTTTCCCAGAAAAAAATGCCCCGCGCGCCGCGGGGCCGAGGAGCCGCCCGGAGCCGCTGCACG
Seq A exon
ATATCTGCAGGATCCAGTGACAGAGGCTATGTGGTACGAGGTGAAGATTGTCTCTTGCAGTCACTAAAG
Seq C2 exon
ATTTACCTTCAAGACTGCTGAAATTTTAACTACCCAAGATGCCTGTCCCTCCCCCACCAGCACCCCCACCGCCACCAACATTTGCACTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075284-'0-12,'0-1,1-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0121314=CAP_N=PU(28.1=94.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGACCCAGAGAGAAGTTTC
R:
GAGTGCAAATGTTGGTGGCG
Band lengths:
168-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types