MmuEX6102198 @ mm9
Exon Skipping
Gene
ENSMUSG00000075284 | Wipf1
Description
WAS/WASL interacting protein family, member 1 [Source:MGI Symbol;Acc:MGI:2178801]
Coordinates
chr2:73285906-73367536:-
Coord C1 exon
chr2:73367384-73367536
Coord A exon
chr2:73349000-73349068
Coord C2 exon
chr2:73285906-73285994
Length
69 bp
Sequences
Splice sites
3' ss Seq
TCTTGTGGATGTTTTGGCAGATA
3' ss Score
6.23
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
ATCTCGGCGAAGTTCCCGGATGGTCGCAGCCTCCCGGCGCGGAGCGCTTTTCCTGCCCGCCCCGGCTCAGCCCTGCGGACCCAGAGAGAAGTTTCCCAGAAAAAAATGCCCCGCGCGCCGCGGGGCCGAGGAGCCGCCCGGAGCCGCTGCACG
Seq A exon
ATATCTGCAGGATCCAGTGACAGAGGCTATGTGGTACGAGGTGAAGATTGTCTCTTGCAGTCACTAAAG
Seq C2 exon
ATTTACCTTCAAGACTGCTGAAATTTTAACTACCCAAGATGCCTGTCCCTCCCCCACCAGCACCCCCACCGCCACCAACATTTGCACTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075284-'1-8,'1-0,2-8=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0121314=CAP_N=PU(28.6=94.1),PF053086=Mito_fiss_reg=PU(28.6=94.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTGCCCTTCATCTCTCTGG
R:
GAGTGCAAATGTTGGTGGCG
Band lengths:
167-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: