MmuEX6103052 @ mm9
Exon Skipping
Gene
ENSMUSG00000040479 | Dgkz
Description
diacylglycerol kinase zeta [Source:MGI Symbol;Acc:MGI:1278339]
Coordinates
chr2:91781122-91782841:-
Coord C1 exon
chr2:91782785-91782841
Coord A exon
chr2:91782447-91782515
Coord C2 exon
chr2:91781122-91781193
Length
69 bp
Sequences
Splice sites
3' ss Seq
ATGACCTTTCTGTCCTCCAGCCA
3' ss Score
8.58
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
ATCAATTTCCGCTGTAAGCCGTCCTTCCGCGAATCAGGCTCCAGGAATGTCCGTGAG
Seq A exon
CCAACCTTCGTAAGACACCACTGGGTCCACAGACGACGCCAGGATGGCAAGTGTCGGCACTGTGGGAAG
Seq C2 exon
GGCTTCCAGCAGAAGTTCACCTTCCACAGCAAGGAGATCGTAGCCATCAGCTGCTCCTGGTGCAAACAGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040479-'12-16,'12-14,13-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.275 A=0.055 C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(8.8=26.3)
A:
PF0013017=C1_1=PU(28.3=73.9)
C2:
PF0013017=C1_1=FE(38.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAATTTCCGCTGTAAGCCGT
R:
CCTGTTTGCACCAGGAGCAG
Band lengths:
127-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: