GgaEX1019517 @ galGal4
Exon Skipping
Gene
ENSGALG00000008380 | DGKZ
Description
diacylglycerol kinase zeta [Source:RefSeq peptide;Acc:NP_001026363]
Coordinates
chr5:22966358-22968417:-
Coord C1 exon
chr5:22968361-22968417
Coord A exon
chr5:22966891-22966959
Coord C2 exon
chr5:22966358-22966429
Length
69 bp
Sequences
Splice sites
3' ss Seq
TCTTTATTTTTTCCCTTTAGCCC
3' ss Score
9.82
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
ATAAATTTCCGCTGCAAACCTTCCTTCAGGGAGTCGGGATCTCGGAATGTACGGGAG
Seq A exon
CCCATAGTTGTCCGGCATCACTGGGTGCATCGGAGGCGACAGGAGGGGAAATGCCGGCAGTGCGGCAAG
Seq C2 exon
GGTTTCCAGCAGAAGTTTGCCTTCCACAGTAAGGAGATTGTAGCCATCAGCTGTTCATGGTGCAAGCAAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008380-'16-14,'16-12,17-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0013017=C1_1=PU(28.3=73.9)
C2:
PF0013017=C1_1=FE(38.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATTTCCGCTGCAAACCTTCC
R:
CGCTTGCTTGCACCATGAAC
Band lengths:
127-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]