DreEX6000519 @ danRer10
Exon Skipping
Gene
ENSDARG00000063578 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:HGNC:2855]
Coordinates
chr4:4640227-4642257:-
Coord C1 exon
chr4:4642201-4642257
Coord A exon
chr4:4640807-4640875
Coord C2 exon
chr4:4640227-4640295
Length
69 bp
Sequences
Splice sites
3' ss Seq
TGCATGTGTGTTTGTGACAGCAG
3' ss Score
6
5' ss Seq
AAAGTACGT
5' ss Score
7.99
Exon sequences
Seq C1 exon
ATCAACTTCCGCTGTAAACCCACTTTCAGAGAGGGCAGCTCTCGATGCCTCAGAGAC
Seq A exon
CAGAATGTGTTGCGGCACCACTGGGTTCATCGTCGCCGACAGGAGGGAAAATGTCGACAGTGCGGCAAA
Seq C2 exon
AGTTTTCCACAGAAGTTCTTCCACAGTAAGGAGATCGTGGCCATCAGCTGCTCCTGGTGCAAACAGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063578-'7-8,'7-6,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(8.9=26.3)
A:
PF0013017=C1_1=PU(28.8=73.9)
C2:
PF0013017=C1_1=FE(37.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACTTCCGCTGTAAACCCAC
R:
CCTGTTTGCACCAGGAGCAG
Band lengths:
123-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]