RnoEX0027549 @ rn6
Exon Skipping
Gene
ENSRNOG00000017737 | Dgkz
Description
diacylglycerol kinase zeta [Source:RGD Symbol;Acc:70929]
Coordinates
chr3:80852140-80853404:-
Coord C1 exon
chr3:80853348-80853404
Coord A exon
chr3:80852949-80853017
Coord C2 exon
chr3:80852140-80852211
Length
69 bp
Sequences
Splice sites
3' ss Seq
ACCTTTCTGTCTTCCTCCAGCCA
3' ss Score
11.26
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
ATCAATTTCCGCTGTAAGCCATCCTTCCGTGAATCAGGCTCCAGGAATGTCCGTGAG
Seq A exon
CCAACCTTCGTAAGACACCACTGGGTCCACAGGCGACGCCAGGATGGCAAGTGTCGGCACTGTGGGAAG
Seq C2 exon
GGCTTCCAGCAGAAGTTCACCTTCCACAGCAAAGAGATCGTAGCTATCAGCTGTTCCTGGTGCAAACAGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017737-'22-17,'22-15,24-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(8.8=26.3)
A:
PF0013017=C1_1=PU(28.3=73.9)
C2:
PF0013017=C1_1=FE(38.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAATTTCCGCTGTAAGCCATCC
R:
GCCTGTTTGCACCAGGAACAG
Band lengths:
127-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]