MmuEX7000370 @ mm10
Exon Skipping
Gene
ENSMUSG00000094429 | Gm19965
Description
predicted gene, 19965 [Source:MGI Symbol;Acc:MGI:5012150]
Coordinates
chr1:116803981-116823410:+
Coord C1 exon
chr1:116803981-116804107
Coord A exon
chr1:116804571-116804666
Coord C2 exon
chr1:116820829-116823410
Length
96 bp
Sequences
Splice sites
3' ss Seq
GTGCTCATTTCAATGTACAGGTG
3' ss Score
7.32
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
GGACCATTGACTTTCATGGATGTGGCTATAGAGTTCTCTAAGGAGGAATGGGAATGTCTGGATTCTACCCAGAGGGCTTTGTATAGAGATGTTATGTTGGAAAATTACAATAACCTGGTTTCCGTGG
Seq A exon
GTGGTGCTGTTTCAAAGCCAGAGGTAATCTTCTGTCTTGAACAAAATAAAGAAACATGGATTATTGGTAGCGAAGATACAGAGGGAAAAGAATCAG
Seq C2 exon
CTCTGTCATGTGATTATACTAAGAAGCTATTCCCCAAAGCATGTACACAGGATTACTTCCAGAACAAAATAACACGAAGATTTGGATGTAATAGCCTTTCAGATCTATATCGAAACAAGTTCTGGGAATGTAGAGGTGATAGCACAGAATATGAAATATATGATTATGTAAATGAACAACTTGAAAAGCACATTAGTTTTATTTCTGAAAATGATCAAGAATCCCTAACTTCCACTGAAAGAACTCAGTCTATGTCACACTCATTTTCAGAACTGGAGAATTCTCTAGGAAAAAATTCACAAGTGTTAAAGCATAACTCAATTCTACACATAAATATACAAACATTACAAAGTGGCATTTGGGTGAATGAAGTGTGTTACCTGATGGATATATCACATAATATGAGATTAAGCAGGGCTTCAGTGCTGTATGAACAAATGAGAGAGTGTAACAGAGAAAACGATACTGAATGTCATCAAGGTGAAGGATATTTTTCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000094429-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.039
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATTGACTTTCATGGATGTGGC
R:
CCTGTGTACATGCTTTGGGGA
Band lengths:
175-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types