MmuEX7000469 @ mm10
Exon Skipping
Gene
ENSMUSG00000057037 | Cfhr1
Description
complement factor H-related 1 [Source:MGI Symbol;Acc:MGI:2138169]
Coordinates
chr1:139556332-139560272:-
Coord C1 exon
chr1:139560086-139560272
Coord A exon
chr1:139557439-139557633
Coord C2 exon
chr1:139556332-139556508
Length
195 bp
Sequences
Splice sites
3' ss Seq
TTTATCTTTTTTTTTCCAAGTGA
3' ss Score
6.74
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
Exon sequences
Seq C1 exon
TATTTACCAAACTAGCTTCCAGAAATGCCCTGAAACAGAAAGTCATGCTCAGCAGTTTTAACAACAGGGTTCCCAGAAGCACCACCAGGATTGGAGTGCTCTAGGCTTTAGAAGATGGGGTTCTGTCGCCTGTTGCTCTTAGCTATTGTTCTCCTAACCTCATGGTTCTCTACTGCCAAAGGTGAAG
Seq A exon
TGAGCCTTTGTGATTTTCCAAAAATAAGACATGGAATACTATATGATGAAAAGAAAAATGAGCCCTTTTCCTCTGTTCTTAGTGGGAAGATTTTATACTACTCCTGTGAATATAATTTTGCATCTCCATCAAATTCCTTCTGGACTCGCATCACTTGCACAGAATCAGGATGGTCACCAACTCCGAAGTGTCTCA
Seq C2 exon
GGCTATGCTTCTTTCCTTTTGTGGAAAATGGTAATTCTACATCTTCAGGTCAAACCCATGTAGAAGGTGACATTGTACAAGTGGTCTGCAATCAAGGCTACAGCCTTCAGAATAATCAGAGCACCATCACCTGTGCTGAAGAGGGCTGGTCCATTACCCCCAAATGCATTTCCACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057037-'0-2,'0-0,1-2=AN
Average complexity
A_S
Mappability confidence:
80%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008415=Sushi=WD(100=92.4)
C2:
PF0008415=Sushi=WD(100=86.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCTGTCGCCTGTTGCTCTT
R:
TGGTGGAAATGCATTTGGGGG
Band lengths:
245-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types