RnoEX0001775 @ rn6
Exon Skipping
Gene
ENSRNOG00000021575 | AABR07021096.1
Description
complement factor H-related 2 [Source:NCBI gene;Acc:688887]
Coordinates
chr13:56650291-56657866:-
Coord C1 exon
chr13:56657766-56657866
Coord A exon
chr13:56650821-56651015
Coord C2 exon
chr13:56650291-56650461
Length
195 bp
Sequences
Splice sites
3' ss Seq
TGTTTTATTTTTATGGCAAGTGA
3' ss Score
1.43
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
AGATGAAATAAAATTTGAATGTAAAGACGGTTTCTACTCTGCAACCCAGGAAACTGTAGCAAAGTGTACAAGTACTGGATGGATCCCTGCTCCAAAATGTA
Seq A exon
TGAAACCTTGTGAGTTTCCACAGATTAAAAATGGAGGTCTATATCATGAGAGGAGACGAAGACCCTACTTCCCAGTACCTATAGGAAATGAGTACAGCTATTACTGTGACAATGGGTTTTTGACACCTTCTCTGTCATACTGGGACTACCTTCGTTGCACAGAAAAAGGGTGGGAGCCTGAAGTCCCGTGCCTCA
Seq C2 exon
AACAATGTGTTTTCCATTATGTGGAGAATGGGGAATCTTCATACTGGCAAAGAAAATATGTAGAGGAACAGGCTGTAAAAGTCCAGTGTTACAATGGCTATAGTCTTCCAAATGGTCAAGACACGATTACATGTACAGAGAATGGCTGGTCCCCTCCTGCCAAATGCATTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021575-'11-11,'11-10,12-11
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=93.1)
A:
PF0008415=Sushi=PU(95.4=91.2),PF0008415=Sushi=PU(0.1=0.0)
C2:
PF0008415=Sushi=PD(3.1=3.4),PF0008415=Sushi=WD(100=96.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGTTTCTACTCTGCAACCC
R:
GCATTTGGCAGGAGGGGAC
Band lengths:
242-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]