RnoEX0001776 @ rn6
Exon Skipping
Gene
ENSRNOG00000021575 | AABR07021096.1
Description
complement factor H-related 2 [Source:NCBI gene;Acc:688887]
Coordinates
chr13:56646613-56651021:-
Coord C1 exon
chr13:56650821-56651021
Coord A exon
chr13:56650291-56650461
Coord C2 exon
chr13:56646613-56646789
Length
171 bp
Sequences
Splice sites
3' ss Seq
ATCATTTTTATGGTTTTTAGAAC
3' ss Score
6.96
5' ss Seq
TTAGTAAGT
5' ss Score
7.79
Exon sequences
Seq C1 exon
GGCAAGTGAAACCTTGTGAGTTTCCACAGATTAAAAATGGAGGTCTATATCATGAGAGGAGACGAAGACCCTACTTCCCAGTACCTATAGGAAATGAGTACAGCTATTACTGTGACAATGGGTTTTTGACACCTTCTCTGTCATACTGGGACTACCTTCGTTGCACAGAAAAAGGGTGGGAGCCTGAAGTCCCGTGCCTCA
Seq A exon
AACAATGTGTTTTCCATTATGTGGAGAATGGGGAATCTTCATACTGGCAAAGAAAATATGTAGAGGAACAGGCTGTAAAAGTCCAGTGTTACAATGGCTATAGTCTTCCAAATGGTCAAGACACGATTACATGTACAGAGAATGGCTGGTCCCCTCCTGCCAAATGCATTA
Seq C2 exon
AATCGTGTGATGTGCCTATATTTGAGAATGCTGGAACTAACAATGATAGCACTTGGTTTAAACTCAATGACAAAATAAACTATGAATGTCATGTTGGATATGTGAACAAACATAAACATACCAAAGGCTCTATAACTTGTCATCATGATGGATGGTCTGACATACCCTCATGTTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021575-'12-13,'12-11,13-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PU(95.4=91.2),PF0008415=Sushi=PU(0.1=0.0)
A:
PF0008415=Sushi=PD(3.1=3.4),PF0008415=Sushi=WD(100=96.6)
C2:
PF0008415=Sushi=WD(100=93.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCTTCTCTGTCATACTGGGA
R:
TGAGGGTATGTCAGACCATCCA
Band lengths:
243-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]