MmuEX1006709 @ mm10
Exon Skipping
Gene
ENSMUSG00000057037 | Cfhr1
Description
complement factor H-related 1 [Source:MGI Symbol;Acc:MGI:2138169]
Coordinates
chr1:139553513-139557633:-
Coord C1 exon
chr1:139557439-139557633
Coord A exon
chr1:139556332-139556508
Coord C2 exon
chr1:139553513-139553695
Length
177 bp
Sequences
Splice sites
3' ss Seq
ACTGACCTTTTTCTCCTCAGGGC
3' ss Score
11.56
5' ss Seq
CCAGTACGT
5' ss Score
7.19
Exon sequences
Seq C1 exon
TGAGCCTTTGTGATTTTCCAAAAATAAGACATGGAATACTATATGATGAAAAGAAAAATGAGCCCTTTTCCTCTGTTCTTAGTGGGAAGATTTTATACTACTCCTGTGAATATAATTTTGCATCTCCATCAAATTCCTTCTGGACTCGCATCACTTGCACAGAATCAGGATGGTCACCAACTCCGAAGTGTCTCA
Seq A exon
GGCTATGCTTCTTTCCTTTTGTGGAAAATGGTAATTCTACATCTTCAGGTCAAACCCATGTAGAAGGTGACATTGTACAAGTGGTCTGCAATCAAGGCTACAGCCTTCAGAATAATCAGAGCACCATCACCTGTGCTGAAGAGGGCTGGTCCATTACCCCCAAATGCATTTCCACCA
Seq C2 exon
ATCCAACAGGGAAATGTGGGCCCCCTCCACCTATTGACAATGGAGACATCACCTCCTTGTCGTTACCAGTATATGCATCATTATCATCAGTTGAATATCAGTGCCAGAAGTATTATCTACTTAAAGGAAATAAGACAATAACATGTAGAAATGGAAAGTGGTCTGAGCCACCAACCTGTATAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057037_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.056
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=92.4)
A:
PF0008415=Sushi=WD(100=86.7)
C2:
PF0008415=Sushi=WD(100=88.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTCTGGACTCGCATCACT
R:
ATACAGGTTGGTGGCTCAGAC
Band lengths:
242-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types