GgaEX6043510 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr8:2682277-2685426:-
Coord C1 exon
chr8:2685235-2685426
Coord A exon
chr8:2683825-2684004
Coord C2 exon
chr8:2682277-2682453
Length
180 bp
Sequences
Splice sites
3' ss Seq
TGCTTACTTTTCTTCCTTAGAAA
3' ss Score
9.33
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
AGAAACCATGTGACTACCCAGCTGTAGAAAATATCAGGTTGAGTGGAAATTGGCAACAGAATTACTTTCCAATGAGGATTGGGCAGACTATTTACTACCGCTGTCGTGAAGGCTACTTAACCCCAAGTGAAGAATATTGGGTTCACATTGTCTGTTCCCAAGGGGGCTGGAAGCCAGAGCCACAGTGCCTCA
Seq A exon
AAAGATGTGATGTCGGGCCTCTGGAAAATGGTTATATCCAAAATAATTGGAAAAGATATTTTAAAGAAGGTGAAAGAACTAAATATTTCTGCAATAAAAACTATCGTACTGAAAATGAAGATGGTGAAATTACGTGTTCAAAGAATGGCTGGTCACCTACTCCAAGATGTATCCGTAAAG
Seq C2 exon
AAACCTGCCAGTGGGTTGATCTGACGAATGGCTATTTCATGGAGAGAAGGGCAACATTTGATATAGGAGAAACAGTCAGCTATAGCTGTTATAATGACTTTGTAACTCCAGAAAAACAAAAAATGGGAATGATACAATGTCAAAAGAATGGCTGGTCTCCACCTCCAAAGTGCATCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002431-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.016 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=92.3)
A:
PF0008415=Sushi=WD(100=90.2)
C2:
PF0008415=Sushi=WD(100=91.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGTCGTGAAGGCTACTTA
R:
GGTGGAGACCAGCCATTCTTT
Band lengths:
257-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]