RnoEX6044501 @ rn6
Exon Skipping
Gene
ENSRNOG00000030715 | Cfh
Description
complement factor H [Source:RGD Symbol;Acc:620428]
Coordinates
chr13:57016310-57030242:-
Coord C1 exon
chr13:57030048-57030242
Coord A exon
chr13:57029508-57029684
Coord C2 exon
chr13:57016310-57016492
Length
177 bp
Sequences
Splice sites
3' ss Seq
TTAATTATTATGTTTCTTAGGGC
3' ss Score
7.31
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
TGAAACCTTGTGATTTTCCACAATTCAAACATGGACGTCTGTATTATGAAGAAAGCCGGAGACCCTACTTCCCAGTACCTATAGGAAAGGAGTACAGCTATTACTGTGACAACGGGTTTACAACGCCTTCACAGTCATACTGGGACTACCTTCGTTGCACAGTAAATGGGTGGGAGCCTGAAGTTCCATGCCTCA
Seq A exon
GGCAATGTATTTTCCATTATGTGGAATATGGAGAATCTTTATACTGGCAAAGAAGATATATAGAGGGTCAGTCTGCAAAAGTCCAGTGTCACAGTGGCTATAGTCTTCCAAATGGTCAAGATACAATATTATGTACAGAAAATGGCTGGTCCCCTCCTCCCAAATGCGTCCGTATCA
Seq C2 exon
AGACTTGTTCAGTATCAGATATAGAAATTGAAAATGGGTTTTTTTCTGAATCTGATTATACATATGCTCTAAATAGAAAAACACGGTATAGATGTAAACAGGGATATGTAACAAATACCGGAGAAATATCAGGAATAATTACTTGTCTTCAAGATGGATGGTCACCTCGACCCTCATGCATTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030715-'14-16,'14-11,16-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PU(95.4=93.9),PF0008415=Sushi=PU(3.4=3.0)
A:
PF0008415=Sushi=PD(3.1=3.3),PF0008415=Sushi=PD(94.8=91.7)
C2:
PF0008415=Sushi=WD(100=93.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACGGGTTTACAACGCCTT
R:
TCGAGGTGACCATCCATCTTGA
Band lengths:
257-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]