GgaEX6043510 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr8:2655986-2659135:-
Coord C1 exon
chr8:2658944-2659135
Coord A exon
chr8:2657534-2657713
Coord C2 exon
chr8:2655986-2656162
Length
180 bp
Sequences
Splice sites
3' ss Seq
TGCTTACTTTTCTTCCTTAGAAA
3' ss Score
9.33
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
AGAAACCATGTGACTACCCAGCTGTAGAAAATATCAGGTTGAGTGGAAATTGGCAACAGAATTACTTTCCAATGAGGATTGGGCAGACTATTTACTACCGCTGTCGTGAAGGCTACTTAACCCCAAGTGAAGAATATTGGGTTCACATTGTCTGTTCCCAAGGGGGCTGGAAGCCAGAGCCACAGTGCCTCA
Seq A exon
AAAGATGTGATGTCGGGCCTCTGGAAAATGGTTATATCCAAAATAATTGGAAAAGATATTTTAAAGAAGGTGAAAGAACTAAATATTTCTGCAATAAAAACTATCGTACTGAAAATGAAGATGGTGAAATTACGTGTTCAAAGAATGGCTGGTCACCTACTCCAAGATGTATCCGTAAAG
Seq C2 exon
AAACCTGCCAGTGGGTTGATCTGACGAATGGCTATTTCATGGAGAGAAGGGCAACATTTGATATAGGAGAAACAGTCAGCTATAGCTGTTATAATGACTTTGTAACTCCAGAAAAACAAAAAATGGGAATGATACAATGTCAAAAGAATGGCTGGTCTCCACCTCCAAAGTGCATCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002431-'11-13,'11-11,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.016 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=92.3)
A:
PF0008415=Sushi=WD(100=90.2)
C2:
PF0008415=Sushi=WD(100=91.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGTCGTGAAGGCTACTTA
R:
GGTGGAGACCAGCCATTCTTT
Band lengths:
257-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]