MmuEX7000643 @ mm10
Exon Skipping
Gene
ENSMUSG00000047369 | Dnah14
Description
dynein, axonemal, heavy chain 14 [Source:MGI Symbol;Acc:MGI:2444525]
Coordinates
chr1:181651606-181657063:+
Coord C1 exon
chr1:181651606-181651659
Coord A exon
chr1:181653532-181653677
Coord C2 exon
chr1:181656995-181657063
Length
146 bp
Sequences
Splice sites
3' ss Seq
ATTCTTTTCTTCTTTTTAAGATC
3' ss Score
10.1
5' ss Seq
CAGGTATTC
5' ss Score
6.49
Exon sequences
Seq C1 exon
AGCTTTGGTAAACATTGTGTGGTCTTCAACTGTTTTGAAGATTTGGATTATAAG
Seq A exon
ATCATTGGGAAATTATTTTTTGGATTGGTGCAGTCTGGAGCTTGGTGCTGTTTTGATGAATTCAACCGAATCAGTATAGAAGTCCTCTCAGTCATTGCCTCGCAGATCCTGGCAATCAAGATTGCCAAAAGCAGCTATTCTGTCAG
Seq C2 exon
GTTCGTACTGGATGGTAGAGAAATACGGATCAATATGTCGTGTGCAGTGCTTATCACCATCAATCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047369-'28-39,'28-37,36-39=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(7.5=100)
A:
PF127742=AAA_6=FE(21.1=100)
C2:
PF127742=AAA_6=FE(10.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTTGGTAAACATTGTGTGGT
R:
CCAGGATTGATGGTGATAAGCACT
Band lengths:
123-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types