DreEX0027490 @ danRer10
Exon Skipping
Gene
ENSDARG00000000606 | dnah7l
Description
dynein, axonemal, heavy polypeptide 7 like [Source:ZFIN;Acc:ZDB-GENE-030616-623]
Coordinates
chr1:21354489-21357296:+
Coord C1 exon
chr1:21354489-21354650
Coord A exon
chr1:21356892-21357029
Coord C2 exon
chr1:21357129-21357296
Length
138 bp
Sequences
Splice sites
3' ss Seq
AATGGTAATTGTGTGTTTAGATG
3' ss Score
5.41
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GATCGCTGTTACCTCTGCCTAATGGGAGCGCTGCAGCTGGATCTCGGAGGAGCTCCTGCAGGTCCAGCAGGCACAGGCAAAACTGAGACCACAAAAGACCTTGCAAAGGCTCTGGCAATCCAATGTGTGGTGTTTAACTGCTCAGATGGACTTGACTATAAG
Seq A exon
ATGATGGGGACATTCTTCAGCGGTTTGGCTCAGTCAGGTGCCTGGTGCTGCTTTGATGAGTTCAATCGCATTAACATCGAAGTGCTGTCAGTCATTGCTCAACAACTTATCACTATTAGAAATGCCAAGGCAGCCAAG
Seq C2 exon
CTGAGTCGATTCATGTTTGAGGGGAGAGAGATAAAATTGGTGATGACATGTGCAGCTTTCATCACCATGAACCCTGGTTACGCTGGCAGAACTGAACTCCCTGACAACCTGAAAGCTCTTTTCCGACCTATCGCCATGATGGTGCCCAACTATGCACTCATCGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000606-'32-34,'32-33,33-34
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(22.9=100)
A:
PF127742=AAA_6=FE(19.5=100)
C2:
PF127742=AAA_6=FE(23.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCACAGGCAAAACTGAGA
R:
CGATGAGTGCATAGTTGGGCA
Band lengths:
258-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]