GgaEX0004141 @ galGal3
Exon Skipping
Gene
ENSGALG00000003170 | DNAH10
Description
NA
Coordinates
chr15:4931449-4932723:-
Coord C1 exon
chr15:4932589-4932723
Coord A exon
chr15:4932030-4932182
Coord C2 exon
chr15:4931449-4931637
Length
153 bp
Sequences
Splice sites
3' ss Seq
GTTTTTCTTCTTCTTGTTAGGCA
3' ss Score
7.4
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GCTTTATCAATGTTTTTGGGAGGAGCACCAGCAGGGCCAGCAGGTACAGGGAAAACAGAAACAACCAAGGATCTGGCCAAAGCACTGGGCTTGCTGTGTGTGGTGACAAACTGTGGAGAAGGCATGGATTTCAAA
Seq A exon
GCAGTTGGTAAAATCTTCTCTGGTCTTGCCCAGTGTGGAGCATGGGGATGCTTTGATGAATTCAATCGTATCGATGCTTCTGTGCTTTCAGTCATTTCTTCTCAGATTCAAGTTATTCGAAATGCTTTAATGAATCGTCTGAAAACATTTCAG
Seq C2 exon
TTTGAAGGACAAGAAATTAACCTTGATAGCCGAATGGGCATTTTTATTACAATGAATCCTGGTTATGCTGGCCGGACTGAACTCCCTGAGTCTGTAAAAGCTTTGTTCAGGCCTGTGGTTGTTATTGTACCAGATCTTCAGCAAATCTGTGAAATCATGCTCTTTTCTGAAGGATTCCTTACAGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170-'30-31,'30-29,31-31
Average complexity
C1
Mappability confidence:
100%=100=80%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.089 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(19.0=100)
A:
PF127742=AAA_6=FE(21.6=100)
C2:
PF127742=AAA_6=FE(26.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTTTGGGAGGAGCACCAG
R:
CCACAGGCCTGAACAAAGCTT
Band lengths:
243-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]