DreEX6011124 @ danRer10
Exon Skipping
Gene
ENSDARG00000061486 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr5:27735404-27738211:+
Coord C1 exon
chr5:27735404-27735538
Coord A exon
chr5:27737770-27737922
Coord C2 exon
chr5:27738023-27738211
Length
153 bp
Sequences
Splice sites
3' ss Seq
ATGACTTTCTTATTCCTTAGGCT
3' ss Score
10.24
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
GCCTTGTCTATGTTCCTGGGTGGAGCACCTGCCGGACCTGCGGGTACAGGCAAAACTGAATCCACTAAAGATCTGGCTAAAGCTTTGGGACTTTTGTGTGTGGTCACCAACTGCGGCGAGGGCATGGACTACATG
Seq A exon
GCTGTGGGGAAGATTCTCTCTGGTTTAGCTCAGTGTGGAGCCTGGGGCTGTTTTGACGAGTTCAATCGCATTGACGCCTCAGTGCTGTCTGTCATCTCATCCCAGATCCAAACAATCAGAAACGCTCTCATGCTGCACCTCCAGAGATTTCAT
Seq C2 exon
TTTGAAGGTCAAGAAATCAGTCTGGACAACCGCATTGGGATTTTCATCACAATGAACCCAGGTTATGCCGGCCGCACAGAACTTCCAGAGTCAGTGAAAGCTTTATTCAGACCAGTGGTTGTCATCGTTCCTGACCTGCAGCAGATTTGTGAGATCATGCTCTTCTCTGAAGGCTTCCTTGTGGCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061486-'36-34,'36-33,37-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.044 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(19.0=100)
A:
PF127742=AAA_6=FE(21.6=100)
C2:
PF127742=AAA_6=FE(26.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGGTACAGGCAAAACTGAA
R:
ACAAATCTGCTGCAGGTCAGG
Band lengths:
246-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]