MmuEX6021075 @ mm10
Exon Skipping
Gene
ENSMUSG00000038011 | Dnah10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:124777159-124779272:+
Coord C1 exon
chr5:124777159-124777293
Coord A exon
chr5:124777817-124777969
Coord C2 exon
chr5:124779084-124779272
Length
153 bp
Sequences
Splice sites
3' ss Seq
CATCCTGTCGGAATCCCTAGGCT
3' ss Score
7.07
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GCGCTGTCCATGTATCTGGGAGGTGCCCCTGCTGGTCCAGCAGGAACCGGCAAGACAGAGACCACCAAGGACCTCGCCAAAGCCCTGGGCCTCCTGTGTGTTGTCACAAACTGTGGTGAAGGCATGGATTACAAG
Seq A exon
GCTGTCGGGAAGATCTTCTCTGGCCTTGCCCAGTGTGGCGCGTGGGGCTGCTTCGATGAGTTCAACCGGATCGATGCCTCCGTGCTGTCTGTCATCTCGTCTCAGATCCAGACAATCCGCAATGCGCTGATCCATCAGCTGACCACGTTCCAG
Seq C2 exon
TTCGAAGGGCAGGAGATCTCCCTTGACTCTCGGATGGGCATCTTCATCACCATGAACCCGGGCTATGCGGGCCGCACGGAGCTGCCTGAGTCTGTGAAGGCGCTGTTCAGGCCTGTGGTTGTCATTGTGCCCGACCTGCAGCAGATCTGTGAGATCATGCTTTTCTCTGAGGGCTTCCTGGGCGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011-'26-47,'26-36,37-47=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(19.0=100)
A:
PF127742=AAA_6=FE(21.6=100)
C2:
PF127742=AAA_6=FE(26.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATGTATCTGGGAGGTGCC
R:
ACAATGACAACCACAGGCCTG
Band lengths:
257-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types