BtaEX6072219 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016523 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr17:54127310-54131197:-
Coord C1 exon
chr17:54131063-54131197
Coord A exon
chr17:54129791-54129943
Coord C2 exon
chr17:54127310-54127498
Length
153 bp
Sequences
Splice sites
3' ss Seq
TGACATTCCTTTCCTCCTAGGCC
3' ss Score
9.61
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GCACTGTCCATGTATCTGGGTGGGGCTCCTGCTGGTCCAGCAGGTACCGGCAAAACCGAGACCACCAAGGACCTGGCCAAAGCCTTGGGCTTGCTCTGTGTCGTAACCAACTGCGGCGAAGGCATGGATTACAAA
Seq A exon
GCCGTCGGGAAGATCTTCTCGGGCCTCGCTCAGTGCGGGGCTTGGGGCTGCTTCGATGAGTTTAATCGCATTGATGCCTCTGTGTTGTCAGTCATCTCGTCCCAGATTCAGACGATAAGAAATGCTCTGATCCATCAGTTAACCACGTTCCAG
Seq C2 exon
TTTGAAGGGCAAGAGATCTCCCTGGACTCCAGAATGGGCATCTTCATCACCATGAACCCTGGCTACGCGGGCCGCACGGAGCTGCCCGAGTCGGTGAAGGCTCTCTTCCGGCCGGTGGTGGTGATCGTGCCGGACCTGCAGCAGATCTGCGAGATCATGTTGTTCTCCGAGGGCTTCCTCTGGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016523-'33-36,'33-35,34-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(19.0=100)
A:
PF127742=AAA_6=FE(21.6=100)
C2:
PF127742=AAA_6=FE(26.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAACCGAGACCACCAAGGAC
R:
GCCCTCGGAGAACAACATGAT
Band lengths:
258-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]