GgaINT0008940 @ galGal3
Intron Retention
Gene
ENSGALG00000003170 | DNAH10
Description
NA
Coordinates
chr15:4932030-4932723:-
Coord C1 exon
chr15:4932589-4932723
Coord A exon
chr15:4932183-4932588
Coord C2 exon
chr15:4932030-4932182
Length
406 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
GTTTTTCTTCTTCTTGTTAGGCA
3' ss Score
7.4
Exon sequences
Seq C1 exon
GCTTTATCAATGTTTTTGGGAGGAGCACCAGCAGGGCCAGCAGGTACAGGGAAAACAGAAACAACCAAGGATCTGGCCAAAGCACTGGGCTTGCTGTGTGTGGTGACAAACTGTGGAGAAGGCATGGATTTCAAA
Seq A exon
GTAAGTTTTTAAGATCTGTATTCACTGGAAAGAGCCATTTACTATTCTTTTTCAGCACACAGAGTAAGCACATGTTTCGAACTTCTGAACATGCGCCTCCTTTAGAGTTACCGTGTCAATTGGTGGTGAAATAGAGTGAAAAATAACTATTTTGAGTGAATGTTGGAGGGAATTTGAAGATTCTATTTGTCCTTTCAAACAGGGAAACAATGGCTAAGTGTCTAAGCTCATCGTGGGCTATCTCCACTTGGCAAATAGTTATTGAAAGGCCTTAGGATGGATTGCTAGCTCCTGCACGTATCCAGAGATTTTTACTCAGACATTAAGAGTTTTAGCATACTCCAATTTGCCGATGGTGGATTTTTTTATGTACTCATTGCTGAGATGTTTTTCTTCTTCTTGTTAG
Seq C2 exon
GCAGTTGGTAAAATCTTCTCTGGTCTTGCCCAGTGTGGAGCATGGGGATGCTTTGATGAATTCAATCGTATCGATGCTTCTGTGCTTTCAGTCATTTCTTCTCAGATTCAAGTTATTCGAAATGCTTTAATGAATCGTCTGAAAACATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170:ENSGALT00000005023:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.089 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(19.0=100)
A:
NA
C2:
PF127742=AAA_6=FE(21.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAATGTTTTTGGGAGGAGCAC
R:
ATGTTTTCAGACGATTCATTAAAGCA
Band lengths:
278-684
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]