DreINT0009114 @ danRer10
Intron Retention
Gene
ENSDARG00000061486 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr5:27735404-27737922:+
Coord C1 exon
chr5:27735404-27735538
Coord A exon
chr5:27735539-27737769
Coord C2 exon
chr5:27737770-27737922
Length
2231 bp
Sequences
Splice sites
5' ss Seq
ATGGTTAGA
5' ss Score
3.54
3' ss Seq
ATGACTTTCTTATTCCTTAGGCT
3' ss Score
10.24
Exon sequences
Seq C1 exon
GCCTTGTCTATGTTCCTGGGTGGAGCACCTGCCGGACCTGCGGGTACAGGCAAAACTGAATCCACTAAAGATCTGGCTAAAGCTTTGGGACTTTTGTGTGTGGTCACCAACTGCGGCGAGGGCATGGACTACATG
Seq A exon
GTTAGAAAGCTCAAAGTCATATTACTTGTTATGGTGGCTTGAGAGAGCACTACATGTTACAATACATAAACTTATTCTTCTTCTTCTTTCTCCTCCTCCTTCTTCTTCATCTTCTTCTTCTTCTTTTTCTTCTTCTTCTTCTTCTTCTTCTTTTTCTTCTTCCTCTTCTTCTTCGAAGACTATTTTCTACAAACATCTCCTCCCAGACTGTTCATACTACAACCACCAAACTAAGACGAAACCTCTAAACTGCTCTGACTCGGGTTGCTATATCTTTTTCAACTGATGCAACTTACGGTTTTCTGAAAACTGACCCAGAAAATTTGAAAAAGTCCCCATTGACTTAACATTGGACCAAGCTTTGTGACCTTATAACTTTTTATTAAACTGTCATACAGACTTAATGTTACTTAGTGTGATATAGCAACACCCTAGCAATGACATAGCAACACCTTAGCAACCACCTAGCAACACCTTAGCGGCCACCTAGCTACGCCTTAGCGACCACCTAACAACTAATCGGGACACCCTAGCAACCACATAGTAACACCTTTGCAATGACCTAAAACACCTTAGCATCCATCTAGCAACATCTTAGCAACCACCTAGCAATACCTCAGCAACCAACTAGCTATGCCCTACAACCTGCTAGCAACCACATAGCAACACCTTAGCAAACGCCTAGCAACACCTAGGCAATGCTAACGCCTTTGCAACTGCCTAGCAGCCATTCAGAACACTCCTGTTACCACTTAGTAACCACCTAGCAGCATCATAGCAACCCCCTAATATTGACTTAAGAATCGTTCAGAAACCCCTATCAATCGCCTTGCAAGAAACATGCCAATCCATACTAGAAACATGCTATACATATATACATGCGTATCCATCTATGCCAACTGTTTCAAACTTCTTAAAAACTAATTCAATCATTTAAACTTTAAGGGCTCTATTTTGACGATCCATGCGCAAAGTGCAAAGCGCAGGGCGCAAAAGCAATAAGGGGAATGTCGGAATCCACTTTTGCTATTTTAAGGATGGAAAAATCTGCTTTGTGCCATGGCGCATGGTCTAAAAGGGTTAAGCTTATTTTCTTAATGAGTTATAGGTGTGTTTTGAGAATAAACCAATCACAGTCTCATCTCCCATTCCCTTTAAGAGCCAGTTGTGTCACCCCATAGCGCATTTGCTATTTACATGACGCACTTTGTAAGTGGAAAAACTGAACACTTCACTAGCAATAAAACAGTTAAACAAAGCATCTATAGCATGAGAGTGAGAGATGAGCCTCCTTATTATTTACTTTCACTCTCGTGGATAGGGAAATTTCTTGTACGGACAGACGTCCTTTAGCCTATAAATAATTTAGTTTGTTAAGCGGAAAGATTTTTTTCAAAACTATTTTTGAATTCAAATTAAATTTTTATATTTATGTAGGCTAGAAAATAATGTTTTGTAATATTTTAATCCTTTATATTTATATCCTATATATATCCTTATGTATATATATATATATATATATATATATATATATATATATATATATACTGTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGTATATATGTATCTTTAATATTTTAATTATTTGTCAAATGTAAAGATATTTGCAAATTGCTGTACGTCCTGTCTGTATTAACCAATGTGGAAGTGAGGCGCACAACTAATGCACTCTGCACTGGACTTTAGACTGACCGGCTTTGTTCTGGTCTATTGAACAGTCTATTATAGTTTCTCAAAATAGCAACGCTCCAGCAATGCGCCTCCACATGCCTCCTTTTTTAGATCAGAATGCCTATGGGCGCACATATGAGCGCAAATGCATTTGCTATTTAAACAGCGTGGTGCAAAACGTCAAAATGATTCTTGCACCAAGCTGAAACTAGCAAACAACAGTTGCGTCGTGCCTTGCGCCGAATTGGCTGGGTGTATGATAGGGCCACCATAAATTTTGTCTACGAACTTTACTTTTTTAGTGTAATATTACTGCTGTTTGTAGTTTCTGTATAGAATATCTAAATACATTTGTTTTATATTTATATTATAGAGGTCTTTACTGTCACTTTTTGTCTATTTAAGATGTCATTGTTAAATAGTTCTTCAAATAAATGTCACAATCTAACTGACTCCAATGCGTTTGTGTTATTAAATTTGAGATGACTTTCTTATTCCTTAG
Seq C2 exon
GCTGTGGGGAAGATTCTCTCTGGTTTAGCTCAGTGTGGAGCCTGGGGCTGTTTTGACGAGTTCAATCGCATTGACGCCTCAGTGCTGTCTGTCATCTCATCCCAGATCCAAACAATCAGAAACGCTCTCATGCTGCACCTCCAGAGATTTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061486:ENSDART00000135878:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.044 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(19.0=100)
A:
NA
C2:
PF127742=AAA_6=FE(21.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]