HsaINT0049239 @ hg19
Intron Retention
Gene
ENSG00000197653 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:2941]
Coordinates
chr12:124332508-124333429:+
Coord C1 exon
chr12:124332508-124332642
Coord A exon
chr12:124332643-124333276
Coord C2 exon
chr12:124333277-124333429
Length
634 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
3' ss Seq
TGACATGTCTTTCTTCCTAGGCC
3' ss Score
10.65
Exon sequences
Seq C1 exon
GCGCTGTCCATGTATCTAGGTGGGGCCCCCGCCGGCCCAGCAGGAACCGGCAAAACCGAGACCACCAAGGACCTGGCGAAAGCCTTGGGCTTGCTCTGTGTTGTCACCAACTGTGGCGAAGGCATGGATTACAGG
Seq A exon
GTAAGGCCTGGCTGTCACCTTTGGTACTGGCTCATTAGGCAGAGAGCTTAAAGCAGGACATGGCATTTCACCTCCTAGTCTTTGACATGGCGACAGTGGAAGAAGCTAGTAGAAAACCTTCCACCACCACAGCCCCAGAACCTAAGTGTGTCTGCTTAAAGACCCTGCTTTGTTAGCAGGATGTAGAGCAAGAGTCCCGGATTCACTACCCTAGTAGGGTCAGGTTGATAATGTACGTGAGTAAAGCGGCCAGCAGACAAGAGAGTGGTGGGATCTGTGGCTAACTGGAGAGCAAAAGTCCATCTAAAGAGGGTGCCCGTCCAGCTTTGGTTCATAATCACCATTTGGGAAAGTGGACCCAGCATTGCTAGATTTTCCCACATTTCAAGAGAAGAGAAGAGAAATGGAGTTTTACACAAAAATCTGGATTTGTAAAATCCCAAGTAGGAGCCAGCCCATGAGGGGCCTTGGAAGTCCTGCCAGAAAAATCCACTAGTCAAGTGGCTGGTCACCTGCTTCTCTGCCAATCAGTGATCTCATTGTTTGCTTTAATTTAGAAAATATATCCATAAATGTGTTGCTTGCAGTTTTAAAGATGAAAATTGCCCTTGTCCTGACATGTCTTTCTTCCTAG
Seq C2 exon
GCCGTGGGGAAGATTTTCTCTGGCCTGGCACAGTGCGGGGCTTGGGGCTGCTTTGATGAGTTTAATCGAATCGATGCTTCTGTGCTCTCCGTGATCTCCTCCCAGATCCAGACGATCCGAAATGCTCTGATCCATCAGTTAACCACGTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197653-DNAH10:NM_207437:32
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(19.0=100)
A:
NA
C2:
PF127742=AAA_6=FE(21.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCTGTCCATGTATCTAGGTG
R:
TGGAACGTGGTTAACTGATGGA
Band lengths:
287-921
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)