HsaINT1011303 @ hg38
Intron Retention
Gene
ENSG00000197653 | DNAH10
Description
dynein axonemal heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr12:123847961-123848882:+
Coord C1 exon
chr12:123847961-123848095
Coord A exon
chr12:123848096-123848729
Coord C2 exon
chr12:123848730-123848882
Length
634 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
3' ss Seq
TGACATGTCTTTCTTCCTAGGCC
3' ss Score
10.65
Exon sequences
Seq C1 exon
GCGCTGTCCATGTATCTAGGTGGGGCCCCCGCCGGCCCAGCAGGAACCGGCAAAACCGAGACCACCAAGGACCTGGCGAAAGCCTTGGGCTTGCTCTGTGTTGTCACCAACTGTGGCGAAGGCATGGATTACAGG
Seq A exon
GTAAGGCCTGGCTGTCACCTTTGGTACTGGCTCATTAGGCAGAGAGCTTAAAGCAGGACATGGCATTTCACCTCCTAGTCTTTGACATGGCGACAGTGGAAGAAGCTAGTAGAAAACCTTCCACCACCACAGCCCCAGAACCTAAGTGTGTCTGCTTAAAGACCCTGCTTTGTTAGCAGGATGTAGAGCAAGAGTCCCGGATTCACTACCCTAGTAGGGTCAGGTTGATAATGTACGTGAGTAAAGCGGCCAGCAGACAAGAGAGTGGTGGGATCTGTGGCTAACTGGAGAGCAAAAGTCCATCTAAAGAGGGTGCCCGTCCAGCTTTGGTTCATAATCACCATTTGGGAAAGTGGACCCAGCATTGCTAGATTTTCCCACATTTCAAGAGAAGAGAAGAGAAATGGAGTTTTACACAAAAATCTGGATTTGTAAAATCCCAAGTAGGAGCCAGCCCATGAGGGGCCTTGGAAGTCCTGCCAGAAAAATCCACTAGTCAAGTGGCTGGTCACCTGCTTCTCTGCCAATCAGTGATCTCATTGTTTGCTTTAATTTAGAAAATATATCCATAAATGTGTTGCTTGCAGTTTTAAAGATGAAAATTGCCCTTGTCCTGACATGTCTTTCTTCCTAG
Seq C2 exon
GCCGTGGGGAAGATTTTCTCTGGCCTGGCACAGTGCGGGGCTTGGGGCTGCTTTGATGAGTTTAATCGAATCGATGCTTCTGTGCTCTCCGTGATCTCCTCCCAGATCCAGACGATCCGAAATGCTCTGATCCATCAGTTAACCACGTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197653:ENST00000409039:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(19.0=100)
A:
NA
C2:
PF127742=AAA_6=FE(21.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCTGTCCATGTATCTAGGTG
R:
TGGAACGTGGTTAACTGATGGA
Band lengths:
287-921
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains