GgaINT0008941 @ galGal3
Intron Retention
Gene
ENSGALG00000003170 | DNAH10
Description
NA
Coordinates
chr15:4931449-4932182:-
Coord C1 exon
chr15:4932030-4932182
Coord A exon
chr15:4931638-4932029
Coord C2 exon
chr15:4931449-4931637
Length
392 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
AAGTTTTCATGTGCTTTTAGTTT
3' ss Score
5.78
Exon sequences
Seq C1 exon
GCAGTTGGTAAAATCTTCTCTGGTCTTGCCCAGTGTGGAGCATGGGGATGCTTTGATGAATTCAATCGTATCGATGCTTCTGTGCTTTCAGTCATTTCTTCTCAGATTCAAGTTATTCGAAATGCTTTAATGAATCGTCTGAAAACATTTCAG
Seq A exon
GTAAAGACTAAAAAAGAAGAGTAATTGTGAAGGCTGATCTTGTGCTAGAGGCCAAGATCCAGGACTGGACCCAACCAGGAGATCAGAGGGCTATTTCTGTGGTAATTGCTTTGTGCTGAGTATTTTGGACTCCAGAATATGTACTCTGAGATTCAGGGATACTAGATCTTTGCTTATTTCATAAACCTTTGCTAGATTCTTCCCTTGTGAAGTAGGAGAAAAGTAAGCTAAATAGAAAATAGTAATTAAATGTACCTACATTAATATCTAAAGCTGAATTTTTAATACATTGTCCTAAGTGGGTGTGCAAGTATCGCTGGTTTTCTCTTTCAGCAAATGATAATATTTCAGTTCCAAACACACATTGTCCTAAAGTTTTCATGTGCTTTTAG
Seq C2 exon
TTTGAAGGACAAGAAATTAACCTTGATAGCCGAATGGGCATTTTTATTACAATGAATCCTGGTTATGCTGGCCGGACTGAACTCCCTGAGTCTGTAAAAGCTTTGTTCAGGCCTGTGGTTGTTATTGTACCAGATCTTCAGCAAATCTGTGAAATCATGCTCTTTTCTGAAGGATTCCTTACAGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170:ENSGALT00000005023:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(21.6=100)
A:
NA
C2:
PF127742=AAA_6=FE(26.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTTGGTAAAATCTTCTCTGGT
R:
CTTTGCTGTAAGGAATCCTTCAGA
Band lengths:
342-734
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]