DreINT0009115 @ danRer10
Intron Retention
Gene
ENSDARG00000061486 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr5:27737770-27738211:+
Coord C1 exon
chr5:27737770-27737922
Coord A exon
chr5:27737923-27738022
Coord C2 exon
chr5:27738023-27738211
Length
100 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGT
5' ss Score
8.31
3' ss Seq
TGTGTTTTTGTGTTGGTTAGTTT
3' ss Score
6.7
Exon sequences
Seq C1 exon
GCTGTGGGGAAGATTCTCTCTGGTTTAGCTCAGTGTGGAGCCTGGGGCTGTTTTGACGAGTTCAATCGCATTGACGCCTCAGTGCTGTCTGTCATCTCATCCCAGATCCAAACAATCAGAAACGCTCTCATGCTGCACCTCCAGAGATTTCAT
Seq A exon
GTAAGTTTAGGTTACTGAGCGCCTCTTATAGTTAAACAATGAATGATAATTGTTGTAAGTATGTCAGGCTCTGAATGTCTTGTGTTTTTGTGTTGGTTAG
Seq C2 exon
TTTGAAGGTCAAGAAATCAGTCTGGACAACCGCATTGGGATTTTCATCACAATGAACCCAGGTTATGCCGGCCGCACAGAACTTCCAGAGTCAGTGAAAGCTTTATTCAGACCAGTGGTTGTCATCGTTCCTGACCTGCAGCAGATTTGTGAGATCATGCTCTTCTCTGAAGGCTTCCTTGTGGCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061486:ENSDART00000135878:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(21.6=100)
A:
NA
C2:
PF127742=AAA_6=FE(26.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGCTGTTTTGACGAGTTCA
R:
CTGCAGGTCAGGAACGATGAC
Band lengths:
251-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]