HsaINT0049240 @ hg38
Intron Retention
Gene
ENSG00000197653 | DNAH10
Description
dynein axonemal heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr12:123848730-123851076:+
Coord C1 exon
chr12:123848730-123848882
Coord A exon
chr12:123848883-123850887
Coord C2 exon
chr12:123850888-123851076
Length
2005 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TCTTCCTTCTTGCCCTCCAGTTT
3' ss Score
10
Exon sequences
Seq C1 exon
GCCGTGGGGAAGATTTTCTCTGGCCTGGCACAGTGCGGGGCTTGGGGCTGCTTTGATGAGTTTAATCGAATCGATGCTTCTGTGCTCTCCGTGATCTCCTCCCAGATCCAGACGATCCGAAATGCTCTGATCCATCAGTTAACCACGTTCCAG
Seq A exon
GTGAGACACATGAAGCCCCCGGGACCATGTCCCTAGGATGGAAGTTTGCCAAGTATGGTAAGCTTCCTCTGTAGCGTCAGTTTCTGGGCCGTTGACACTCCAGACCAGGCTTCCTGTAGAAGATCTGTTGGTTTTTCCAATTGAGATGATTGGGTTTCCAAAATTATCATCATTGATGATAAGGTTTGTAATAGTCCAAGGACTTCACACTGACTCCAGACACAGAACCAATAGTTATGAATGGGCGTGGGGCAGAGTTCTCAAATAAGTGATGTGCAGGGTCCCCTAGAAAGGAAACAATATTCTTGGCGACTTCCCAAGTTTGAGAAAACCTGACTTAGAAAGCGAATGTTCCTTGCAATCATTATCACAGTGAACAAGAAATTTTGCCTTCATACCTTGTGAAGTTACGGCATCATAACAAGCAGGATTTGCAAGGTTATCAAAGTGAGAAGGCAGAATTTTAAAACAATTGTTGAGAATTCACCAATTTCTCTCTGCCAAAGAATATGTTTGCAGACTTGAGTTTGAGAAGTCTGCATTAAATTACACCAGATTAAGCTGGATCCAAATTTGGAGAAACATGATCTTATTATGTAATCTAGGTGGCCCAGAAGGGGATTCTCTGAAAACACAGGACCAGCGTGGGTGGGCCATTTCCCTACACCGGGGTCTTCTGGGTCCCTTGCTGTCCTTCTGCCTCTGTCCTCCCCCCTCCATGCCCTGCACACTTGTCACTAAGCCACTTGCTCCACAGTCATACCATGCCTTGTGACACCACATGTGTCCCCATCTGAGTGGAATTGTCCCTTCTTCCCTTCACTGGAAAACTCCTATACATCCTTTAGAGCCCCATTCCAGGATGAAAATTCAGCTTGAGCTGGTGGCCCTGTCATCTCACATGCGTCCTCCTCAGATCTTGGCAGGGCTCACTGTTAAGAGATTGTGTCAGCTGGAGACTGTTCAATATTTTCAGGATTCCAGTAAAGGGTCTGGATAGATTTCCCTTTGATGAGTTCTTTTGAGGGATTTTTGGGGCTGAGCTGACTGCTCCCGAGAGAGGGAATTAACCTGCAATGTATATAGATTTCCAGAAGCTGTGTTTCTCAGAGCCAGGAGGCAGCAGCTATCTGCTCTTCCCCCTGGGCCATCTGGGCCATCTGGGCCTCTTGTGGGATACTGAGGCTAGGGATGGTCTCAGGGCCGACCTATGAGTCAAGGCAGTGGCCTTGTTTTGGGGGAGGCTGGCTGTCTTCCGGGCTGCCCTCTCGTTGGTGATGCAGACTGTGCCTCCTAACAACAAAAATTTTCTGTCCTCTGCCTGGCTGGTGGACAATCAAAAAAAATAAAATAGAAAACTTCACCGAGAGACGACCGGACTCAACCTTCAGCTAAAAAGGCTAAGAATATAGGGATTTCCGTGGTTTGTTGGTACCTGGGGCAACCAGAGGAATGAAGACTGGTTTCTTGAGGGGTTTGAGGTGGGATTCTTTAGGCAGGAGTGACTGCATGAAGTCCAGGCACCCGCAGAAGGTGCAAAGCCAGGTGAGAGGAATGGAAGCCGGCGCTGTGTGAGGTGGTGGGCTGGGCGCTCCCAACCTGGGCTGTCTCCTTTCATCGCCACAGCCGTGCCACGAGGTGGGTTGCATTTCTGTTGTGCAGAAAAATAAACTGAGACTCAGAGAGGTTAAGTGACCTGCTGAGGGTCACACAGCTTCTTGTATCAGCCCCAGACTCTGTGCTTCGCCAACCTGGGCCCCTTCTCCAAGGTAGTGCCCTGGGTTCAGGTCTGAGTTTGGGGTTCCACTGAGACCTGCCCTCCCCAAGGCCTTCAGCGAGGGGGGCCCTGCATTGAACACCGGGGAGGGAAAAAGAGACAAGTGGTGTTGTCAGCCTCATACCATGAAAATGAATCGCCACGCAGCTCGCCGCAGGCCCCCTTTCCAAGGGGCTGGCCGGCCGGGCCACCTAACTGCTTCTTTCTTTCTTCCTTCTTGCCCTCCAG
Seq C2 exon
TTTGAAGGGCAGGAGATTTCCCTGGACTCCCGCATGGGCATCTTCATCACCATGAACCCCGGCTACGCAGGCCGCACGGAGCTGCCCGAGTCGGTGAAGGCGCTGTTCAGGCCTGTGGTCGTGATCGTGCCCGACCTGCAGCAGATCTGTGAGATCATGCTCTTCTCTGAGGGCTTCCTGGAGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197653:ENST00000409039:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(21.6=100)
A:
NA
C2:
PF127742=AAA_6=FE(26.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development