MmuINT0050596 @ mm10
Intron Retention
Gene
ENSMUSG00000038011 | Dnah10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:124777817-124779272:+
Coord C1 exon
chr5:124777817-124777969
Coord A exon
chr5:124777970-124779083
Coord C2 exon
chr5:124779084-124779272
Length
1114 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CTTTCTCTCCTGCCACCCAGTTC
3' ss Score
7.24
Exon sequences
Seq C1 exon
GCTGTCGGGAAGATCTTCTCTGGCCTTGCCCAGTGTGGCGCGTGGGGCTGCTTCGATGAGTTCAACCGGATCGATGCCTCCGTGCTGTCTGTCATCTCGTCTCAGATCCAGACAATCCGCAATGCGCTGATCCATCAGCTGACCACGTTCCAG
Seq A exon
GTGAGGGGGTGGGGTGGGCGACTCCAGAGTGTTTGGTCCATCATGGTAGGGAGAGCAGGGTAGGGTAGCTCCTGTCAGTCACTGTGGCCCCAAAGCAGAGACAGATTTACCTGTGTTTTCTAGCTGTCTCTTTACCTCCTTTTAATATTATCCAGGTACCGCATGGCACAGATGGTACCCCCCCCCATCCCCTAACCCCCTAACTCCATTCAGGGTAGGGCTCCTCCCAATCTGTTAACTCTCACGGAAACACTCGCAGGTGTACCAAGGTGATACTGAAGCCACTGAAGTTGACAATGACCACATCTGACCAGACATCAAACCTGACCAAATCTGGCCAGACACGACACCTCACCAGACACGACATCTGGTCATACCTCATCAGACACTGCACCTGGCCACACCTGACCAGATACCACACCTGGTCATATCAGACTATACCTGACCAGATACCACACCTGACCATGTATACCTGACCACATCTGGCCATACCTGACCATACCTGACCAGACACTACCCCACATCTGACCAGATACGACACTTGACCAAATCTGGCCAGACAACATAACCTGATTACACCTAACCAGAAATCACACTTCACTAGATAGATAATACAGCTGATCACACCTGCCAGATACTATACCTGACCAGACACCACACTTGCCAGACACCACACCTGCTAGACTCCACACCTGATCAGACACCACACCTGACCGGGCACCACACCTGACCGGGCACCACACCTGACCGGGCACCACACCTGACTGGGCACCACACCTGACCAGACACCACACCTGCCAGACACCACACTTGCCAGACACCACACCTGCTAGACTCCACACCTGACCAGACACCACACCTGGCCGGGCACCACACCTGACTGGACACCACACCTGACCGGGCACCACACCTGACCGGACACCACACCTGACCGGGCACCACACCTGACCGGGCACCATACCTGGCTTCCCAGAGATATCTTGGCTTCTGTGCTACTCCAGAGGCCCACCTTGCCCACATCACCATGTCCCTTGGGAATGCCCTGTGGCCCCAGTTCTAATCCCTACATGAACTAGCAGCTCCATCACTCCCTGCTTTCTCTCCTGCCACCCAG
Seq C2 exon
TTCGAAGGGCAGGAGATCTCCCTTGACTCTCGGATGGGCATCTTCATCACCATGAACCCGGGCTATGCGGGCCGCACGGAGCTGCCTGAGTCTGTGAAGGCGCTGTTCAGGCCTGTGGTTGTCATTGTGCCCGACCTGCAGCAGATCTGTGAGATCATGCTTTTCTCTGAGGGCTTCCTGGGCGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011:ENSMUST00000141137:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(21.6=100)
A:
NA
C2:
PF127742=AAA_6=FE(26.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTCGGGAAGATCTTCTCTG
R:
CCCAGGAAGCCCTCAGAGAAA
Band lengths:
335-1449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types