HsaEX6014189 @ hg38
Exon Skipping
Gene
ENSG00000115423 | DNAH6
Description
dynein axonemal heavy chain 6 [Source:HGNC Symbol;Acc:HGNC:2951]
Coordinates
chr2:84624902-84637377:+
Coord C1 exon
chr2:84624902-84625063
Coord A exon
chr2:84634504-84634641
Coord C2 exon
chr2:84637210-84637377
Length
138 bp
Sequences
Splice sites
3' ss Seq
CTGCTTTATTTTGATTTCAGATG
3' ss Score
8.41
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GATCGCTGCTATCTTTGCCTCATGGGAGCTTTGCAGCTTGACCTTGGGGGTGCACCAGCTGGTCCTGCTGGCACTGGGAAAACAGAGACTACCAAAGATCTGGCAAAAGCTCTTGCCATCCAGTGTGTGGTCTTTAACTGTTCAGATGGTTTGGACTACAAG
Seq A exon
ATGATGGGGCGCTTCTTCAGTGGCTTGGCACAGTCAGGGGCCTGGTGCTGCTTTGATGAATTTAATCGAATTGACATAGAAGTTCTGTCCGTCATCGCGCAGCAACTCATTACCATTAGGAACGCCAAAGCGGCAAAG
Seq C2 exon
CTCTCTAGATTCATGTTTGAGGGGCGGGAAATAAAGTTGGTGATGACTTGTGCAGCCTTCATCACAATGAATCCTGGCTATGCAGGGAGAACTGAATTGCCAGATAATTTGAAAGCCCTGTTTAGACCATTTGCGATGATGGTTCCAAATTATGCCTTGATTGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115423-'40-45,'40-43,41-45=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(22.9=100)
A:
PF127742=AAA_6=FE(19.5=100)
C2:
PF127742=AAA_6=FE(23.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGCCTCATGGGAGCTTTGC
R:
TCAGTTCTCCCTGCATAGCCA
Band lengths:
244-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains