RnoEX6013925 @ rn6
Exon Skipping
Gene
ENSRNOG00000015581 | Dnah6
Description
dynein, axonemal, heavy chain 6 [Source:RGD Symbol;Acc:621797]
Coordinates
chr4:101071886-101080598:-
Coord C1 exon
chr4:101080437-101080598
Coord A exon
chr4:101075637-101075774
Coord C2 exon
chr4:101071886-101072053
Length
138 bp
Sequences
Splice sites
3' ss Seq
CAGCTTTGCTTGCCTTTCAGATG
3' ss Score
8.73
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GATCGCTGCTATCTTTGCCTCATGGGGGCTTTGCAGCTTGACCTCGGAGGCGCACCAGCTGGCCCTGCTGGCACTGGGAAAACAGAGACTACTAAAGACCTAGCAAAAGCGCTTGCCATCCAGTGTGTGGTCTTCAACTGCTCTGACGGTTTGGACTACAAG
Seq A exon
ATGATGGGGCGCTTCTTCAGTGGTTTGGCACAGTCGGGGGCCTGGTGCTGCTTTGACGAATTCAATCGGATCGATATAGAAGTCCTGTCGGTCATTGCCCAGCAACTCATCACCATTAGGAATGCCAAAGCTGCAAAG
Seq C2 exon
CTCTCCAGATTCATGTTTGAGGGACGGGAAATCAAGCTCGTTATGACCTGTGCAGCTTTCATCACCATGAATCCGGGCTATGCAGGCAGAACGGAACTTCCAGATAACTTGAAGGCCCTGTTCAGACCAATGGCTATGATGGTTCCCAATTACGCACTGATTGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015581-'29-34,'29-33,30-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(22.9=100)
A:
PF127742=AAA_6=FE(19.5=100)
C2:
PF127742=AAA_6=FE(23.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATCTTTGCCTCATGGGGGC
R:
CTGGAAGTTCCGTTCTGCCTG
Band lengths:
257-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]