MmuEX6004930 @ mm9
Exon Skipping
Gene
ENSMUSG00000052861 | Dnahc6
Description
dynein, axonemal, heavy chain 6 [Source:MGI Symbol;Acc:MGI:107744]
Coordinates
chr6:73088602-73094165:-
Coord C1 exon
chr6:73094004-73094165
Coord A exon
chr6:73092255-73092392
Coord C2 exon
chr6:73088602-73088769
Length
138 bp
Sequences
Splice sites
3' ss Seq
CAGCTTTGCTTGCGTTTCAGATG
3' ss Score
7.93
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GATCGCTGCTACCTTTGCCTCATGGGGGCTTTGCAGCTTGACCTCGGAGGCGCACCAGCTGGCCCGGCTGGCACAGGGAAAACAGAGACCACCAAAGACCTAGCAAAAGCCCTCGCCATCCAGTGTGTGGTCTTCAACTGCTCTGACGGTTTGGACTACAAG
Seq A exon
ATGATGGGGCGCTTCTTCAGTGGCTTGGCACAGTCAGGGGCCTGGTGCTGCTTTGACGAATTCAACCGGATTGACATAGAAGTCCTGTCGGTCATTGCCCAGCAACTCATCACCATTAGGAATGCCAAAGCCGCAAAG
Seq C2 exon
CTCTCCAGATTCATGTTTGAGGGACGGGAAATCAAGCTCGTTATGACCTGCGCGGCTTTCATCACCATGAATCCTGGCTACGCAGGCAGAACGGAACTGCCGGACAACCTGAAGGCCCTGTTCAGACCGATGGCTATGATGGTTCCCAATTATGCGCTGATTGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052861-'29-30,'29-28,30-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(22.9=100)
A:
PF127742=AAA_6=FE(19.5=100)
C2:
PF127742=AAA_6=PU(46.8=98.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGCAGCTTGACCTCGGAG
R:
GAACAGGGCCTTCAGGTTGTC
Band lengths:
257-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: