MmuEX7000904 @ mm10
Exon Skipping
Gene
ENSMUSG00000036792 | Mbd5
Description
methyl-CpG binding domain protein 5 [Source:MGI Symbol;Acc:MGI:2138934]
Coordinates
chr2:49313650-49316972:+
Coord C1 exon
chr2:49313650-49313725
Coord A exon
chr2:49313956-49314015
Coord C2 exon
chr2:49316388-49316972
Length
60 bp
Sequences
Splice sites
3' ss Seq
ACTTTTGTTTTCTTAAAAAGGTT
3' ss Score
9.12
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
AAGTGGGAAACTAAATAACCATTTAGAAGCTGCTATTCACGAGGCCATGAGCGAACTGGACAAAATGTCTGGGACT
Seq A exon
GTTCATTAAGTGGCAGCAGCAGTATGGTGAGGTCCCAACCCCAACTTTCTGAGTTTGACT
Seq C2 exon
GTTCACCAAATCCCACAGGGTGACAGACAAATGAGGCCCCCCAAACCCAAGAGGAGGAAGATCTCCAGATAACAGAGACTGTTCCACTGACACACAGTGTTGATCAAAGGAGCATGTACAGACACACCTGTATGTGGGTATTGATATGACCACCGTTAGATCAATCTGTAATCTACGGCAGATAGCTACCACCACCACAGGGCCCTAAAGGGAACAGCAATGGAGACAAGCATTGATCAGGAAGGAAAATGAATGTCAAAAGCAAAACAACAATCAAAATCCCTGTATGAACAAAGCGGTAAATGGTCACGTGATCGCTGAGAACGTTTTCTATTGTACTAAAATTGTGATTATAAGAAATAGTCCAAATGTTTCTGGAGAATTTTCAGTGTTGTATATAGAAAATACAGAATTTCATGGCGATATTAGAAATGTAAATATTGTACAATATTGTCATGTACAAGCATACTTAATGCACACTTTATCTTTTATTGTACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036792-'56-65,'56-62,67-65=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0085512=PWWP=PD(22.0=69.2)
A:
NO
C2:
PF0085512=PWWP=PD(33.9=80.0)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATTCACGAGGCCATGAGCG
R:
TGTGTGTCAGTGGAACAGTCT
Band lengths:
140-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types