MmuEX7003864 @ mm10
Exon Skipping
Gene
ENSMUSG00000109344 | A26c2
Description
ANKRD26-like family C, member 2 [Source:MGI Symbol;Acc:MGI:3644757]
Coordinates
chr7:62778423-62810503:-
Coord C1 exon
chr7:62810366-62810503
Coord A exon
chr7:62808148-62808209
Coord C2 exon
chr7:62778423-62778452
Length
62 bp
Sequences
Splice sites
3' ss Seq
ACCACTTCTGTACATGGCAGAAG
3' ss Score
5.12
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
AACAGCACTCATGTATGCTGTTCAATGTGATTCTGAAGCCATTGTCAAGCAATTACTGGAGAAAGGTGTTGATCATTCCTTAAAGGATGCATTTGGATGGAGTGCACTTCAGTATGCAGTGGCAGGGAAACGCAAAGT
Seq A exon
AAGGAGTTTAATTTTGGACTATGAGGACTCACTCCTCTTAGGTCAGCACCATATCTTCTCAG
Seq C2 exon
GACAGCTGCGTACAGACTTCTATTCATCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000109344-'4-8,'4-4,5-8=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(51.1=100)
A:
PF127962=Ank_2=PD(14.4=59.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATTCTGAAGCCATTGTCAAGC
R:
AGAAGTCTGTACGCAGCTGTC
Band lengths:
133-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types