MmuEX7006482 @ mm10
Exon Skipping
Gene
ENSMUSG00000032572 | Col6a4
Description
collagen, type VI, alpha 4 [Source:MGI Symbol;Acc:MGI:1915803]
Coordinates
chr9:106074822-106080547:-
Coord C1 exon
chr9:106079945-106080547
Coord A exon
chr9:106076872-106077459
Coord C2 exon
chr9:106074822-106075430
Length
588 bp
Sequences
Splice sites
3' ss Seq
GTTTACCTCCTTCTTTACAGCGT
3' ss Score
9.16
5' ss Seq
AAAGTAAGC
5' ss Score
7.31
Exon sequences
Seq C1 exon
CAGTTTGCAAGTTGGCAGAGACAACATCCGTGTGGGTCTGGCCCAGTACAGCGATACACCCACTTCTGAGTTCCTGCTTTCAGTTTATCACCGCAAAGGCGATGTGTTGAAACACATCCGTGGACTTCAGTTTAAGCCTGGAGGCAACAGGATGGGCCAGGCCCTGCAGTTCATCTTAGAGCATCACTTCCGGGAAGGAGCCGGGAGCCGGGCAAGCCAAGGGGTGCCTCAGGTGGCCGTGGTGGTGAGCAGCGGTCTAACAGAGGACCACATTCGCGAACCTGCGGAGGCTCTCAGGAGAGCGGGAATCTTGGTATACGCTATTGGGGTCAAAGACGCATCTCAGGCTGAACTCAGGGAGATTTCGAGTAGTCCCAAGGATAACTTCACCTTTTTTGTTCCCAACTTCCCTGGCTTGCCTGGCCTTGCCCAGAAGCTGCGGCCAGAGCTCTGCAGTACTCTAGGGAAGGCAGCTCAATATACTGAGCGGGAGTCTCCAG
Seq A exon
CGTGCTCAGAAGCATCCCCGGCTGACATTGTGTTTTTGGTGGACAGTTCAACTAGCATCGGACTCCAGAACTTCCAGAAAGTGAAGCATTTCCTCCACTCTGTTGTCTCGGGGCTCGACGTCAGAAGCGATCAGGTGCAAGTGGGGCTGGTCCAGTACAGTGACAACATTTACCCAGCCTTTCCGCTGAAGCAGTCCTCTCTGAAGAGCGCCGTCCTGGATCGGATCCGGAATCTGCCCTACAGCATGGGGGGCACAAGTACCGGAAGCGCCCTGGAGTTCATCAGGGCCAACTCCTTGACTGAGATGAGTGGCAGCCGTGCCAAGGATGGGGTTCCTCAGATAGTTGTCCTGGTGACAGATGGGGAGTCCAGTGATGAGGTCCAGGATGTGGCTGACCAGCTGAAAAGAGACGGGGTCTTTGTGTTTGTGGTAGGGATCAATATTCAAGATGTCCAAGAGTTGCAGAAAATAGCCAACGAGCCGTTTGAGGAGTTTCTCTTCACCACAGAAAACTTCAGCATCTTGCAGGCGCTCTCAGGAACCCTCCTTCAGGCCCTGTGTTCCACGGTGGAGAGGCAGATGAAAA
Seq C2 exon
AGTCTACCAAGACCTACGCAGACGTGGTCTTTCTTATTGACACCTCCCAGGGGACATCACAGGCTAGTTTCCAGTGGATGCAGAATTTCATCTCTAGAATTATTGGCATCCTGGAGGTCGGCCAGGACAAATACCAGATTGGGCTGGCTCAGTATAGCGATCAAGGTCACACTGAGTTTTTGTTCAATACCCACAAGACCCGGAATGAGATGGTCGCACACATCCATGAACTCTTGGTGTTCCAAGGTGGCTCCAGGAAGACTGGCCAAGGCCTTCGGTTTCTTCATCGGACTTTCTTCCAGGAGGCAGCAGGAAGCCGGCTCTTACAGGGTGTCCCTCAGTATGTGGTAGTCATTACTTCAGGGAAATCTGAGGACGAGGTCGGAGAGGTCGCACAGATCCTGAGGAAGAGAGGCGTGGACATCGTGTCTGTGGGCTTGCAGGACTTTGACAGGGCAGAACTGGAGGGGATAGGGCCTGTAGTGCTTGTGTCTGACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032572-'8-6,'8-5,9-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.010 C2=0.010
Domain overlap (PFAM):
C1:
PF0009223=VWA=WD(100=86.6)
A:
PF0009223=VWA=WD(100=90.9)
C2:
PF0009223=VWA=WD(100=83.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTAGGGAAGGCAGCTCAA
R:
CTGCTGCCTCCTGGAAGAAAG
Band lengths:
355-943
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types