RnoEX0023492 @ rn6
Exon Skipping
Gene
ENSRNOG00000031782 | Col6a4
Description
collagen, type VI, alpha 4 [Source:RGD Symbol;Acc:1564060]
Coordinates
chr8:114757942-114763553:-
Coord C1 exon
chr8:114762951-114763553
Coord A exon
chr8:114759988-114760575
Coord C2 exon
chr8:114757942-114758550
Length
588 bp
Sequences
Splice sites
3' ss Seq
TGTTTACTCCTCTCTTGCAGCCT
3' ss Score
10.05
5' ss Seq
AAAGTAAGC
5' ss Score
7.31
Exon sequences
Seq C1 exon
CAGTTTACAAGTCGGCGGAGATAACATCCGTGTGAGTCTGGCCCTGTACGGTGATACACCCACCACTGAGTTCCTGCTTTCGGCCTATCCCCGCAAAGGTGATGTGTTGAAGCACATCCGTGGACTTCAGTTTAAGCCCGGAGGCAACAGGATGGGCCAGTCCCTGCAGTTCATCCTAGAGCATCACTTCCCGGAAGGAGCCGGGAGCCGGGCAAGCCAAGGGGTGCCTCAGGTGGCCCTGGTGATGAGCACTGGTGTAGCTGAGGACCACTTTCGTGAACCTGCCGAAGCTCTCAAGAGAGAGGGAATCTTGCTATACGCCATTGGAGTCAAAGACGCAGCTCAGGCCGAACTCAGGGAGATTGCGAGTAGTCCCAAGGATAACTTCACCTTTTTTGTTCCTAACTTCTCTGGCTTGCCTGGCCTCGCCCAGAAGCTGCGGCCAGAGCTTTGCACTACACTAGCAAAGGTAGTGCAACATACTGAGCAGGGATCTCCAG
Seq A exon
CCTGCACAGAAGCATTCCTGGCTGATATTGTGTTTTTAGTAGACAGCTCAACTAGCATTGGACTCCAGAACTTCCAGAAAGTAAAAAATTTCCTCCACTCCATTGTCTCGGGGCTTGACGTCAGAAGTGATCAGGTGCAAGTGGGGCTGGTCCAGTACAGTGACAACATCTATCCAGCCTTTCAGCTGAAGCAGTCCTCTCTAAAGAGCGTGGTCCTGGAACAGATCCGGAATCTGCCCTATAACATGGGGAGTACAAATACCGGAAGTGCCCTAGAGTTCATCAGGGCCAACTACTTGACCGAGATGAGTGGCAGCCGTGCCAAGGATGGGGTTCCTCAGATAGTTATTCTGGTGACAGATGGGGAGTCCAATGATGAGGTTCAGGATGCGGCTGACCAGCTGAAAAGAGACGGGGTCTTTGTGTATGTGGTAGGGATCAATATTCAAGATGTCCAAGAGTTGCAAAAGATAGCCAGCGAGCCATTTGAGGAGTTTCTCTTCACCACAGAAAACTTCAACATCTTGCAGGAGCTCTCAGGAAGCCTCAGTCAGGCTGTGTGTTCCACAGTGGAGAGAGAGATGAAAA
Seq C2 exon
AGCCTACCGAGACCTACGCAGACGTGGTCTTTCTTATTGACTCATCCCAGGGGACATCCCAGGCCAGTTTCCGGTGGATGCGGCATTTCATCGCTAGAATTATTGACATGCTGGAGGTTGGCAAGGACAACTACCGGATTGGGCTGGCTCAGTATAGCGACCAAGGTCACACTGAGTTTTTGTTCAATACCCACAAGACCCAGAATGAGATGGTCGCGCACATCTATGAGCACTTGGTGCTCCAAGGTGGCTCCAGGAAGACAGGTCAAGGCCTTCGGTTTCTTCATCGGACTTTCTTCCAGGAGGCAGCAGGAAGCCGGTTCTTACAGGGTGTCCCTCAGTATGTGGTAGTCGTTACCTCAGGCAAATCTGAGGACGAGGTCCGAGAGCCTGCACAGATCCTGAGGAACAGAGGCGTGGTCATCATGTCCGTGGGCTTGCAGGACTTTGACAAGGCAGAAATGGAGGGGATAGGGCCTGTAGTGCTGGTGTCTGACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031782_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.005 A=0.015 C2=NA
Domain overlap (PFAM):
C1:
PF0009223=VWA=WD(100=87.1)
A:
PF0009223=VWA=WD(100=89.8)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGAGTCAAAGACGCAGCTC
R:
TCAGTGTGACCTTGGTCGCTA
Band lengths:
352-940
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]