MmuEX7006954 @ mm10
Exon Skipping
Gene
ENSMUSG00000078700 | D030028A08Rik
Description
RIKEN cDNA D030028A08 gene [Source:MGI Symbol;Acc:MGI:2441931]
Coordinates
chr11:96959554-96965060:+
Coord C1 exon
chr11:96959554-96960281
Coord A exon
chr11:96960861-96960996
Coord C2 exon
chr11:96963571-96965060
Length
136 bp
Sequences
Splice sites
3' ss Seq
GTTCCATCTGATTTCTACAGGTC
3' ss Score
9.34
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
Exon sequences
Seq C1 exon
AAACGATCATTTTGAGCACTCCTTCTCATGGCCATTTCCCTGTAAATCAGCAGAGACACTGGGGAATGGAGCAGTTTGACTCCCATGGCTGCTGGAGTCTCCTTTACTGCCCCGTCTGTCTTGAGCAACACTGGGCTCTGTCTGTTCTTGTCTGCTTTTAGAGTGGGCTGAGCTGGTAACATAAAGGAGCAACAGCTGAGTGGCGGTGATGACGCCTTTAATCCCAGCCCTCAGGAGGCAGAGGTAGGCAGATTTCTGAGTCTCAGGCCAGCCTGGGCTACAGAAAAAAAAAAAGGGAAGGAAGAAAAAAGCAGCAGCAGAGACTGCAAAGTGACCAGAGAGCTAAGCAGCCGGCAGGGCAGGCTACCAAAGCAGCAAGATGGCGGCCACAGGGCAGCTAAAAAGACAAGAGTTGACAGCTGGCAGAATGGCCAGCTGCCCTGACAGCAGCAGAAGCAAAAGCAGCCGTGAGCACACTCCAGAACCCAGAGGTCATCATG
Seq A exon
GTCAGGACTACTTGGCCTAAGACCTGAAGAGACTCCAGGGGAGAAGCCATTTCCTGCCCACCCCAAATGATGGTGACTCCAGCTTCCCGTAAGATCTGACGATGATCTGCCTCAGTTTCAAAAGCAAGCCAAAAGG
Seq C2 exon
GTTAAGAGCTTTTCCTGCAAGGCCCCGCTCGAGCATCCCAGCCCCGGGCTTGCCAGGGTGAGCTTTTCCTTTGCTTACACTCATCGATTCAGGCCAGGCCTGCCTTCACCACACTCCCCACACCATCTAAGATGAGGAGAACTGGGAGACTCGTGTGTCGGTCCGGCTGTGCTGAGTCCAGAGTGCCCCCTGGTGGACACTGGTAGCCCTCTAAATCTGAATCTCTTCATTGGGGCAGAGCCTCTAGGCTTGTGCTAAGGCAGGCTACCAGCTCAATCCAGCGGGAGCTAGATGCAAGCCAGTCTGGGAAAGAAGAAAGGCAAGGCCAGCATTCCTGAGCAGCAGGACATAGCTGTCCTACTCTAAAGGCTGTCTGTCTGCTCAACCTTCATCAACCTTCACACAGAGACACAAGGGCCTCCAGGAACCAGAAGACGGCAACTCCTTTAAGCCAGCAGTTCTCAGCCTATGGGTCGTGACCCATTTGGCAAACCTCTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000078700-'32-24,'32-21,33-24=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTGACAGCTGGCAGAATGG
R:
CACGAGTCTCCCAGTTCTCCT
Band lengths:
245-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types