RnoEX0001021 @ rn6
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr10:84890244-84907307:+
Coord C1 exon
chr10:84890244-84890377
Coord A exon
chr10:84898467-84898606
Coord C2 exon
chr10:84903295-84907307
Length
140 bp
Sequences
Splice sites
3' ss Seq
GTTCCATCTGCTTTCTACAGAGG
3' ss Score
7.19
5' ss Seq
GGGGTGAGC
5' ss Score
5.97
Exon sequences
Seq C1 exon
CAACGTGGGGCTGACTGGCTCTGGGGAAGAGCTGTTGGCAGTGCTGGCGACAAGGATAGAGTGTGAGGCCTGGTGACAGGATGGCAGCGCAGAAGCCTCAGCGCTCAGGAGCTGCGGTCCTGGCTGCTCTGAGG
Seq A exon
AGGGAACTATGTCTACTTGGCCTAAGACCTGAAGAGATCTCAGGGCAGAAGCCATTTCCTGCCACCCCAAATGATGGTGACTCCAGCTTCCCATCAGATCTGCTGCTGATCTGCCTCTGTTTCAAAAGCAAGCCAAAGGG
Seq C2 exon
GTCCCTGAAAGATAAAGGGTAAAGAGAAACAGACAGGCTGGCCAGGAAGCAACACAGTGCCTTCAGTGGTCACCAGGCTCCAAGCCCGTGAAATGCTGCAGAGCAAGGGAGATCCTGCAGAGGCTGCCAACTGTGAAACCAGAGGACAGACGGCTCTTGCAAAGTGGACACGTAGATTCTAGGACATCACAGACACAGATCTCTGCAGAATCACTGTAGCCATGAAGGGACAGCTGCAAATAAAAGTATGCAGTTGCAAAAACCAGTCCTGTAGGCACAGCCAGTTGCTTTTAAAGGTTCTAGATGGAGTCATCGGCAAAAAGCAGGCACCATGCATTTTGTTTCAACTGACACTGAAATGCTCATAGTATTTTTGTGAACAAGAAAGAGGAAATGAAGGCTGGGTGATCATCTTACTTGGGGCTAAGGGTGGTGGGTATAAGCCAAGGTACCTCCAAGTCAGCCTGGGCTCAGGACCAGGGACCACAGGCATCCTGGGT
VastDB Features
Vast-tools module Information
Secondary ID
Rn.63937_MULTIEX1-4/5=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATAGAGTGTGAGGCCTGGT
R:
ACTTTGCAAGAGCCGTCTGTC
Band lengths:
246-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]