RnoINT0141896 @ rn6
Intron Retention
Gene
ENSRNOG00000010492 | Sp2
Description
Sp2 transcription factor [Source:RGD Symbol;Acc:1592078]
Coordinates
chr10:84893570-84895297:-
Coord C1 exon
chr10:84894985-84895297
Coord A exon
chr10:84893745-84894984
Coord C2 exon
chr10:84893570-84893744
Length
1240 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGA
5' ss Score
7.4
3' ss Seq
TGCCCTTCTTTTTCCCACAGGAC
3' ss Score
13.58
Exon sequences
Seq C1 exon
GTTTATATCCGTACACCTTCTGGTGAGGTACAGACGGTCCTTGTCCAGGACAGCCCCCCAGCAACAGCTGCAACCACGTCAACCGTCTCCTGTAGCAGCCCGGCGCTCCGAGCTCCCCATCTGAGTGGCTCCAGCAAAAAGCATTCGGCTGCAATTCTCCGAAAAGAGCGACCCCTGCCAAAGATTGCACCTGCTGGGAGCATCATCAGCCTGAACGCTGCACAGCTGGCAGCAGCTGCTCAGGCCATGCAGACCATCAACATCAATGGTGTCCAAGTCCAGGGTGTGCCTGTCACCATCACCAACACTGGCG
Seq A exon
GTGAGAGAGAGTCCTGAAGCCAGGAGGGCCCTGCAGCCGGGCTTTGCACTCAGCCTATGGGAATCCCAGCCAGGCCCCTGGGATCTCCAGTGTCAGCCATGAGGATGCTGGCCATCCGAGATGATGCCTGGTGTTTGCCTGGTCCCCTCCTGCCTCAGGGCACATCTGTGTGTATTGTCTTCACAGTTGGTCCTTACTGTGAGATAGCAAGTCACATGACCACATGATAACTGCAGATGCTGAATATGATGGAGAAAACAGATGTGTTCAATAATATACAAACTCAGTTTATTTGGCTGGTTACTTGCCCAGCTCAGGTGACTAAGGACCATGCCTTGTAAAGGAAGTCAGGCTTTTCGGGGGCAAGGGATGTGTGTTTTGAGACAAGGTTTCTCTGTAGTCCTGGCTGTCTGGAACTCACTATAGATCAGAACAGCATCTGCCTCCTGAGCGCTGTGATTAAAGGCCTGTGCCAGTACGGTCCACTCAGGACAGCTGAAGGAGGGCGGTTGCTGTTGAGCGTGGGAGGCAGGGAAAGCTGTCCCAGGCAGCAGGACAGCTTGTACTGCACAAGAGCTGATGATCTGTGCTGTGAGTGCAGCCCTGAGAAGAAGAGGGAGGGGCCTGGGAGATGATGGCTCAGTGCTTAGCTGTGTTTAATTCCCAGCACCCATGGTGGCTCCCAACAGTCTCTAGCTAGTCCCACAGGATCTAATGCCCTTTTCTGGTATGTAGACATACATACAGACAAAACATCCATATGCATAAATATATAAGTAAATCTTAGAGTTAAGAGGAGAGAGGGCGACTGAAGCCGCCTGGCAAAGCAGGCTGCATTCTGCACCTGGGAGCCGCTCAGCTTCCCGGGTAGCAAGAGATCATGGCCTTCCCCATCCCTAGTGAACTTCTAGCAGTTTATGTATTTGGTTTGTCCACTTTTAGGAGACACAGAGAGAGAGGACAAAGAAGCCTAGAGTGATTTCTCCAAAGCCCATGAACAAAACTTCTTAGGCAAGTTTGCCTCTAGCGGAGTAGAATCTCAGGGAAGCCTCTGGCCCTCACTGCCCTCCAGTGTATTAGGCCCCATGATTCTTCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAGAAGAAGAGGAGGAGGAGAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGGCTAGCCTGGGCTTCCTTTCCTGAACATGCCCTTCTTTTTCCCACAG
Seq C2 exon
GACAGCAACAGCTGACAGTGCAGAATGTTTCTGGAAACAACCTGACCATCAGTGGGCTGAGCCCCACCCAGATCCAGCTGCAGATGGAGCAGGCCCTGGCCGGAGAGGCCCAGCCTGGGGAGAAACGGCGGCGCATGGCCTGCACATGTCCCAACTGCAAGGACGGGGAGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010492:ENSRNOT00000068083:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.581 A=NA C2=0.424
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTGGCTCCAGCAAAAAGC
R:
GTCCTTGCAGTTGGGACATGT
Band lengths:
356-1596
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]