MmuINT0150749 @ mm10
Intron Retention
Gene
ENSMUSG00000018678 | Sp2
Description
Sp2 transcription factor [Source:MGI Symbol;Acc:MGI:1926162]
Coordinates
chr11:96956105-96957736:-
Coord C1 exon
chr11:96957424-96957736
Coord A exon
chr11:96956280-96957423
Coord C2 exon
chr11:96956105-96956279
Length
1144 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGG
5' ss Score
7.93
3' ss Seq
CACCCTTTTCTCTCCCACAGGGC
3' ss Score
13.79
Exon sequences
Seq C1 exon
GTTTATATCCGTACACCTTCTGGTGAGGTACAGACAGTCCTTGTCCAGGACAGCCCCCCAGCAACAGCTGCAACCACATCAACCGTCACCTGTAACAGCCCTGCACTCCGAGCTCCCCATCTGAGTGGCACCAGCAAAAAACATTCAGCTGCCATTCTCCGAAAAGAGCGGCCCCTGCCAAAGATTGCACCTGCTGGGAGCATCATCAGCCTGAACGCCGCACAGCTGGCAGCAGCTGCTCAGGCCATGCAGACCATCAACATCAATGGTGTCCAAGTCCAGGGTGTGCCTGTCACCATCACCAACACTGGCG
Seq A exon
GTGAGGGAAAGGCCTGAAGCCAGGAGGGTACTGGGAGCAGGGCTTTGCATTCAGCATATGGGAATCCTGAGCCGGGCCCCTGGGGTTTCCAGGGTCAGCCAGGAGGATGCTCAGCTTGCTCCTGGTCCCTGCCAGCCTCAGGTCATATCTGTCTTCACACTTGGTCCTTACAGTAATACTGTGAGATAGGAAGTCACATGACCACATGATAACTGCAGATGTTGAATAGAGACTGAGAAAATAGATGTGTCCAAGTAATATACAAATTCACATTAATTTGGCTGGTCACTTGCCCAGGTCAGGTAGCTAAGGGCTGTACCTAATGTAAAGGAAGTCAAGGCTTCTTTTGGGGGTCAGGGGTAGTGTTTCGAGACAGTGATTCTGTATAGTCCTGGCTTTCCTGGACCACTGTAGACCAGAACAGCGTCTGCCTCCTGAGCGCTATTATTAAAGGCATGTGCCACCACCGTCCAGCTAAGGACGGCTGCTGTTGAGAGTGGGAGGCAGGGGAGGGCGTCCTGGGCAGCAGGACCAGCTTACACTGCACCAGAGCTGATGATGATACATTCTGCGAGTGCAGCTTTGAGAAAAAGGGAAAGCGACTTGGGAGATGGCTCAGTGCTCAGCAACACCGGCTGCTCTTCCAGAGCCTGTGTTTCATTCCCAGCACCCACATGGCAGCTCACAACAGTCTAGTCCCATAGGATCTAATGCCCTTTCCTGGTATGTAGACATACACACAGACAAAACATCCATATACATAAAATACATAAAAAAATCTTTAAAAAAATAAAAAAATGAAGAGAGAGGGAAGGAGGGAGGGAGGGAGAGCTGAGGCTGCCTAGCGAAGCAGGCTGCATCTGCACCTGGGAGTCTGCAGCGCCCCCGGCGGCGGCGAGAGCTCACGGCTTTCCACATCCCTAATAAACGTCGAGCATCTTAGGCATTTGCTTGGTCCACAGAACAAAAATTCTTAGGCGAGTTTCCTGCTAGCAGGGGCAGAATCTCAGGGAGGCCTCTGGCCCTCACTGCCCTCCAGTGTATTAGGCTCCATGAGTCTTCCTCAGCCAGAGAGAGGGAGAGGGAGGGAGAGAGGGATAGCCTGGGCTTCCTTTCCTGAACCACACCCTTTTCTCTCCCACAG
Seq C2 exon
GGCAGCAGCAGCTGACCGTGCAGAACGTTTCTGGAAACAACCTGACTATCAGTGGGCTGAGCCCCACCCAGATCCAGCTGCAGATGGAGCAGGCTCTAGCCGGAGAGGCCCAGCCTGGGGAGAAACGGCGGCGCATGGCCTGCACGTGTCCCAACTGCAAGGATGGGGAGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018678:ENSMUST00000062652:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.581 A=NA C2=0.424
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATTCAGCTGCCATTCTCCG
R:
TCTTCTCCCCATCCTTGCAGT
Band lengths:
347-1491
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types