GgaINT1026147 @ galGal4
Intron Retention
Gene
ENSGALG00000000233 | SP2
Description
Sp2 transcription factor [Source:HGNC Symbol;Acc:HGNC:11207]
Coordinates
chr27:3874435-3876957:-
Coord C1 exon
chr27:3876657-3876957
Coord A exon
chr27:3874610-3876656
Coord C2 exon
chr27:3874435-3874609
Length
2047 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGC
5' ss Score
6.32
3' ss Seq
CTCCCCGTTTCCCTCCCCAGGCC
3' ss Score
12.67
Exon sequences
Seq C1 exon
GTCTACTTCAAAACACCATCGGGTGAACTGCAAACAGTGCTGCTCCAGGAAGCCCCGGCCGTGACGGTGGCTCCATCCAGCACCTCTTGCAGCAGCCCCGTGTCCCGCAACTCTGGCACGGTGACCAGCAGCAAGAAACCAACCGCACGCAAGGAGCGCCCGCTGCCAAAGATCGCGCCCGCCGGAGGAGTCATCAGCTTGAGTGCAGCCCAGCTGGCAGCTGCAGCACAGGCCATGCAGACCATCAACATCAACGGAGTGCAGGTCCAGGGTGTGCCTGTCACCATCACCAACGCTGGAG
Seq A exon
GTGGGCTGCGTGCTGCGCCGCGGCGGGCAGGAGGGACAGCGGGGTGCAGATGTGGAGGGCAGACGGCCCCCTCTAGCAGTGCTCTTTGCAGCTGGGATATGGCAGCTTCGTCAACAGAACTCTCGTGTCCCAGGGCTGAATGTTGCTGGGTGTTAGATGTCAACAGCTTCTCTGGCTCTCTTCGCTGCAGGAGGCTCTGTGTGTTTCATAGGGTGGCTCTTTGGCTGCTCTGCTGGTTGGCTGTGTCAGGGATAGCAGTGAGCACAGACCTGCAGTGTTGGGCTGCGCAGTCGTGCTGAGCTGCAAGACATGGAATCATAGCATGCCTTGGGTTGGAAGGGACCTTAAAGATCATCGGTTCCAACTCCCCTGCTGTGGAATGGTTGCCTCCCACCAGATCAGGCTGCCCAGGGCCCTATCCAGCCTAGCCCTGAGCACCTCTGGGAAAGTCCACACTTCTCTGGGCAGCTGTGCCAGGTCCTCACTGCCCTCTGAGTGAAAAATTTCCCCTGACGTGTCTGCTTGGGGGCCCTGACTCACTCTGTTTGCTCCTGCGTTCTGTGCAGGGGCAATGAGCTGCACCCAGGGATGAGTTTGTCGTCAGGAGACACCTCTCCTTGCATCTGCCATGCTGCCAGGAAAGGATGCTGCTGCTTGTGCTGCCCGTAGCCAAACCAGGAGAGGTGCCTTCACGCATGCAGGCTGTGTCATGAGGCACTGCCACTCCCTCAGAGCCAGCCCAGCTCCTCTGTGGAACAAGTGTCTGCCTTAAACCAAAAAGAACCAGACACAGCCCCGGGCTTGTGAGCCACAGACAGCCCCGACACACTTCAGTATGGGTCACTTCAATCTCCCATTGCCTGCTAGGAGCTGCACGTCCCCATGGCAGCTCTGTCCTCCCTGTGCTGGCAAATTGTCCCCAGCCCAGAGCTGACAGCTGCAGGGAGCTGAGGGGAGGAAGTTAGGTCTGAGGGAAGTTTATCTGCTTTGTGATCCAGAAAGACCTGCTGGCGTTCGGTGGTTTCTCTCCCAGCAAGAACCAGCAGGAGCCCCAGCTGGGTTTAGCAGTCAGAAGCTGTTCTTTCTTGCACGAGTAAACGATGTCAGCATAAAACGTGGTCCAGTGTGGTTTAGTACTCCGCAGTGGACCGCTGTCATCACTGGGGTAGCTCTTAAGGGGGTTTTTAATTGCTGCTTTGTGACGGGTGTCAGGAGATGGCACGGGCAGATACTGCCGCTGTCTGCGCCGCTCCCCGCACCGTGCCACGAGGTTGGCAGGGCTGTGCTGAGCCCTGGCTGTGAGGGGACCGGTAGGACCTGCTAGCTCCACGAGTGGAGGCTGAGCCTGGTTTTCTCAAGGACGAGAAGGGCCTGTGTGCATCGCTGTGCTGTCAGAGAGCTGCCCTCACCCTAGGCTTAGCACTTCCCCTCCCAGCGTTGCACTGACACCTTCGCTCTGCCCGTCTCCCCTCTGTGCAATGACCTCCTCTTTGCTCATCCATCAGATCCCACTCTTCTCCTCCTCCTCCTCCTTGCCTGCTGCCCCCAGAGCTTGCTGACGCTGACCCCGTCTTCTTCTTTCCAGCCCCCATCACGGCTGCCCGGGTGCTGTGCAAGGCCCAGGCTGCCACCTCCGTGAGTGCCCGAGCGTGGAGCGGCCCTTAGGGTCCGGGGTAAGTCCCGTTTTTTTGGTCAATATATTGCACGTTTTTTCAAAGTTTCTTTTTTGTTTCCTCTTTGGTCATTTCCCCACCCCGAAGGGTCAAACCAAAAACTTTGAAAAACCGCACAGTATATTCAGAAAAAAGGGACTTACCAACCCCACTTGGGGCCAGCATGTAGCGGCGGGGCCGTGGCAGTGCTGCATGTGGGGCTGGGGCGCTGAGACCCGGGGTGCCCGGCTGGGGTCCCCCCCCCCTTCACACGTGCTCTTTCCCCCGGCCAGCCGCCTCCACAGGGCTTCAGTGCACGCAGCATGGAGGCACGCTCAGCCCCTCGGGCACGGGGGCTTGCAGGGCAGAACCTGACTCCCCGTTTCCCTCCCCAG
Seq C2 exon
GCCAGCAGCAGCTGACTGTGCAGAACGTCTCTGGCAACAATCTGACCATCAGCGGCCTGAGCCCGACTCAGATCCAGCTGCAGATGGAGCAAGCGCTGTCCGGGGAGATGCAGCCAGGGGAAAAGCGACGACGGATGGCGTGCACCTGCCCCAACTGCAAGGATGGGGAGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000233:ENSGALT00000000312:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.416 A=NA C2=0.610
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]