HsaINT0157098 @ hg38
Intron Retention
Gene
ENSG00000167182 | SP2
Description
Sp2 transcription factor [Source:HGNC Symbol;Acc:HGNC:11207]
Coordinates
chr17:47922962-47925093:+
Coord C1 exon
chr17:47922962-47923274
Coord A exon
chr17:47923275-47924918
Coord C2 exon
chr17:47924919-47925093
Length
1644 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGG
5' ss Score
7.93
3' ss Seq
GCCCCTCTTTGTCCCCACAGGGC
3' ss Score
13.35
Exon sequences
Seq C1 exon
GTCTACATCCGCACGCCTTCCGGTGAGGTGCAGACAGTCCTTGTCCAGGACAGCCCCCCAGCAACAGCTGCAGCCACCTCTAACACCACCTGTAGCAGCCCTGCATCCCGTGCTCCCCATCTGAGTGGGACCAGCAAAAAGCACTCAGCTGCAATTCTCCGAAAAGAGCGTCCCCTGCCAAAGATTGCCCCAGCCGGGAGCATCATCAGCCTGAATGCAGCCCAGTTGGCGGCAGCTGCCCAGGCAATGCAGACCATCAACATCAATGGTGTCCAGGTCCAGGGCGTGCCTGTCACCATCACCAACACAGGCG
Seq A exon
GTGAGGATGGCCCCTGTGGCCAGGGTGTTGGCAGTGGTACCTGCTCCTAGCAGGTGGAAACTATGGGCTGGCCCCGGGATTTCCAGTAACAATAGTGAGGATGCTGTCCATCATAGCTTAAGGGTACGTCCACCTGCAGCTTCTCACCTAGTCCTTACAATAGCACTCAGAGATAGTTTAAGGCACATGTCCCCATCTGACAGCTGAAGACAGAGAAGATAGATGTACTCGGAAAACTTTCCAACTGACATCCAAACGCAAAGACGGCTTCTTGAAGGAGAAAGCCTTGCGTTAAGGTTGGAAGAAAAGAAGGGAGCCCTGGCAGTCAGAATAGTTTGTGCTGCACTTCAGTTCAGTGGTGAGATTTATGCTGTGAAACCAGCCTTGCAAATAACCAAAGGAAAAATTGGAGCAACCTAGCAAAAATGGCTCCTTATGTAGGGGGAGCTCTCTGAATTTCTCTTCATCCTTAATGAATTTTTTTTTTGAGACAGAGCCTCACTCTGTCGCCCAGGCTGGAGTGCAGTGGTGCGATCTCTGCTTCAGCCTCCCGAGTAGCTGGGATTATAGACGCCCACCACCACGCCCGACTAATTTTTGTATTTTTCGTAGAGATGGGGTTTCACCGTCTTGGCCAGGCTGGTCTTGAACTCCTGACCTGGTGATCCATCCGCCTCAGCCTCCCAAAATGCTGGGATTACAGGTGTGAGCCACCGTGCCCAGCCCATCCTTAATGAATGTTTAGCACTTTAACACATTTGCTTTTCCCTCTTGAGGTGACCCCCAAGAGGATAAGGCATCCTAGAGGATCTGATTTTTCCCAAAGCCCATAGAACTGTGTCCTCTTTTGTGTTTTTTGGTTTTTTTTTTTTTAAGACATGGCCTCAGGGCCTCGCTCTGTCATCCAGGCTGAAGTGCAGTGGCACGATCATGACAATGCAGCCTCAGCCTCCTGGGCTCAAGCAGTCCTCCTACTTCTTCTTCCTGAGTAGCTGGGACTACAGGCATGTAGCACCATGCCCGGCCAATTTTTTAGTTTTTTGTAGAGATGGGGGTCTCCCTATATGCCCAGGCTGGTCTTGAACTCCTGGGCCCAAGCAATTGTCCTGCCTGCCAGAGTGCTGGGATTACAGCTATGAGCCACTGTACCTAGCCTGTGACCTCTTGTCTTTTTAACAGAAATCCCTGGAGACTTTCCTAAAAGCAGAGTTGGTATCTCACAGGGGCCTAAGGTTGGAGGAGATTCAGGAAGAAATGTCTTAAGACCCTTCCCAGCTGAAATCATGTTGGCAATATTCTAAAGCAAATTCTGCCTACATAGTACAGTGGTTCAGGGCACTGACTTTGAAATGGGCTTCCTGGGTTCAGATCTGGGTTCTACCACTTACTAGCTGTGTGATCTTGATATGTTATTGAGCCTCAGTTTCTTCATCTGTAAAGTGCTGATGATAGTACCTATTTTATAGGGTCATGGAGATTAAATGAGTCCCTGTACAAAGGTCCTTAAAATGATATCCAACATACAGCAGGCTCTCAAAAATAGCTGCTGTGATTATCATCTTTGTCATGTGCAGAAGGGCAGAAGGGTTGACTCGAGGTTTCAGGCTTCCTCACCCTGAACTCTGCCCCTCTTTGTCCCCACAG
Seq C2 exon
GGCAGCAGCAGCTGACAGTGCAGAATGTTTCTGGGAACAACCTGACCATCAGTGGGCTGAGCCCCACCCAGATCCAGCTGCAAATGGAACAAGCCCTGGCCGGAGAGACCCAGCCCGGGGAGAAGCGGCGCCGCATGGCCTGCACGTGTCCCAACTGCAAGGATGGGGAGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167182:ENST00000376741:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.581 A=NA C2=0.475
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTCAGCTGCAATTCTCCGA
R:
TCTTCTCCCCATCCTTGCAGT
Band lengths:
346-1990
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains