DreINT0154646 @ danRer10
Intron Retention
Gene
ENSDARG00000076763 | sp2
Description
sp2 transcription factor [Source:ZFIN;Acc:ZDB-GENE-080410-1]
Coordinates
chr11:12007575-12011297:-
Coord C1 exon
chr11:12011012-12011297
Coord A exon
chr11:12007762-12011011
Coord C2 exon
chr11:12007575-12007761
Length
3250 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
GTTTGTTTGGTGTGTTTTAGGCC
3' ss Score
10.41
Exon sequences
Seq C1 exon
GTGCTGATTAAAACAGCCTCGGGGGAATGGCAGGCTGTACAGATACAGGAAACTACTGTTACGACTCCAACAACACCCACCAGCACACCAACACCTGCGGTGGTCACAAAAAAAGTTCAAACAGGAACGCGGAAAGAAAGGACTCTACCTAAAATCGCCCCGGCTGGAGGGGGTTTGATAACACTGAACGCAGCTCAGTTAGCATCTGCTGCTCAGGCTGTGCAGACCATCAACATCAACGGAGTCCAGGTACAGGGGGTTCCTGTGACCATCACCAATGCTGGGG
Seq A exon
GTGAGTGACACACTTTTTGGGTTGTATGTTGTATCTAATGCAGAGTAGACACTGACTTTATCCCTGATTTTCATTCGTTGAAGTGTTCTGTGAATTGCTGGCAAATACTCAAAATCAGAGGCAAATCGGTGCGAGGGTGTTCAGATGAGTGGAAATCATGAAGTATGAATAATCAGTAACACTTTACAATAAGGTTGTATTAGTTAATGCATTTACCAACATGAACAAACAATGAACAATTCATTGATTACGGTATTTGTTCATGTTAGTTAACATTAGTTAGTACAGAGGTTATTCGTGGGAGTTAAGTTATAAAAATAACCCGCAATAGGCAAAATCTGTAAAGTAGACAGCTTTATTTTTTACTATTATTATAGATGTTTTAAGGCTGTAAAACCCCTAACTACACACTTCTCTCTTTTTTTTTTAAACACTCTCAAAGTTCAAATGCAGAACATAATGCGCTGTGAGAAAAAAAGCATCTGAAATTGCTCAAAGCAGCAAATCTGCGAGGCTGTGGAAGGTAAAGCGCCTTATATCGAGCGACCATGAGTATACAGTTGTTCATTGGTTTGTTAACTCCTGGTGGATTAACTAATGTTAACAAGCAGGTATTTTTATCTTAATAAGGCATTATTAAATGTTAAACTATGATTAATAAATGCTATACAAGTATTGTTCATAATTAGTTCATGTTAGTTAATACATTAACTAATGTAACTTATGAAACCTTATTGTAATAAGTGTGACAAAATTATCAAAGACTAATCTCAGACACCCATCAAATATTTAGCAAAATATAATTAATTCAAATAAATGAAGGAATATGTTATTTATATTAGATTAGTATATGGAGCCAGATCAGTCTCAAAAATAATACATTTACAAAGTATAATTCATACATTCACAACTCAATTCACAAAATCCAATTCATAAATTTAAAACACGATTCATAACTACTCAATTCCAAATCATAAATTCAAAACTTGATTCATAAATACACAAATCCAATTCATAAATTCAAATCACAAACCAAAAATGCACAAATCCAATACATAAATTCAAAACACGATTCAAAAAATACACTTTCAGTTTGTAAATTTAAAACATGATTCAAAAATACATATCCACTTTGTAAATTCAAAAAAATTATTAAAAAAGTCCAAAAATCACGATTCAAAAATACACAAATCCAATTCGTACAAGCAAAACACGATTCAAAAATACACAAATACAATTTTAAAACACGATTTAAAAATACATTTATGAATTCAAAACATGATTTAAAAATACACAAGTCCAATTCGTAAATTTAAAGCACAATTCATAAATACACAAATCCAATTCATAAATTCAAAACATGATTCAAAAATACAAAAATCTAGTTTGTAAATTCAAAACACAATTCAAAAATACATAAAATCCAATTTGGAAATTCCTAACATGATTCAAGAATACAAAAATCCAGTTCATAAATTCAAAACACCATTCAAAAATACACAAATTCAATTCATAAATTCATAACATTGTTCAAAAATACAAAAATCCAGTTCGTAAATTCAAAACGCCATTCTAAAATCCAAAAATGCAATTTGTAATTTCAAAACAGGATTCTAAAATACATAAATCTAATTCGTAAACTCAAAACATGATTTAAAAATACACAAATCCAATTTAGAAATTTTAAATGATTCGAAAATCCAGTTCATAGATTCAAAACACAATTAAAAAATACACAAATCCAATTCATGAGTTCAAAACAAAAATTTATAAATCAATTTAAAAACTCAAAACAGCATTCATAAATACAATTCATAAATTCAAATCATGATTCAAAAATACACACATTCAGTTAATAAATTCAAAACAAAATTCAAAAATACACAAATCCAATTCGTAAACCTAAAACATGATTTAAAAATACCAACAAGTCCAATTTGTTAATTAAAAACATAATTCAAATGTACACAACACGATTCAAAAATTCACAAATCCAATTTGTGAATTCAAAACACAATTAAAAAATACACAAATTCAACACTATTCAAAAAACGTAAATTAATTTTTAAACTCAAAGCACGATTTAAAATACACAAATCCAATTCATGAATTCAAATCACCATTTAAAAATACACAAATCCAGTTATGGCCCGTTTCCACTGAGTGGTACAGTACGGTACGGTTTGGTTTGGTACGCTTTTATGGCCGTTTCCACTGTCAAAACCGTACCGTACCACTTTTTTGGGACCCTTTCGAAAGGGTCCCAAACTGCAGAAAGGGTCCCAAAAAGTGGAGCTACACACAGCAGCTGAACGCTATTGGTTTACAGAGATACGTCATTCGTAGACTCAACAAGCCAGAATGTAAACAAAGGACCCGCCATATTTGAAATACACAGCGAGAGATTACAGCGGAATTATAAATACATATGCAGCCATGGTCGATCCTGCAAACAAACCCTGTCGTCGTCATGATAAACAGCCACAAAGCCATGGAGAAGAGCAGATTCACCCTGTGCCGCGTAGTTTTTAACGAGCCAGTCTGAAGCCCGAGTGGTTTCGCTTTCTTTCTTGCACTCGCCGCGCGTCTCTATCTGAGATAACATACTTCTTGATCTGATAATAATAACATGCACTTGATTATTGACAAGCTTTGGAAACCCGATCCTGTGAGAAGCTGACAAACGCGAGTGACACATTCTGAAAGAAAAGGACAAACTCGAGAGTGGAGCGCGGGAAAAAAGGCTAAGCCAAGGAACACATTATTTCTTCAGCAAACGTGAACAAACTGCCTTGTTTTAATCTTTATTATCACTTTTTGGACTAATATGAACTGGGAATGATGGAATGACTCTCTAACAGTGGCTTCATGTGCTGCTGAAGATTACAGACACAGATGAGAGGTTTTCACTGACTGTAGGCTATACTTTGTGTTGTTTTGAACCTAATTAACAACGTAATGTCTGCTTTGAGTAGTTCTTCTGTAGTTGGTAACATATCGGAGACTGTAAGGGTCTGTATGTGTTCATATATGATCTTTTATTTTGTAAATGCATTATTTTTGAGACTGATCTGGCTCCATACCTACTCCCTTCTAAAGTAATTTCAGCAGTCGCAATCATCTGAAACAACTGTGATTAAATCAGATGACAATGAGACAGTTAATAAAGTTGGCCTATTAGCTAGTGGATCTTACATGGTGTTTAAAGACGTGCATTAATGTATTTTTTTGTTTGTTTGGTGTGTTTTAG
Seq C2 exon
GCCAGCAGCATCTGACAGTGCAGACTGTTCCCAGCGCAGGTCTGCAGCTGGGCAGTGTGCAGACGCAGACACAGACCATGCAGATAGAGCAGACGCAGACACTCGCTCTGGAGCTGCAGACTCAGCCAGGAGAGAAGAAACGGCGCATGGCCTGCACATGCCCTAACTGCAAGGACGCAGAAAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076763:ENSDART00000111919:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.531 A=NA C2=0.444
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]