RnoEX0001018 @ rn6
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr10:84890244-84907307:+
Coord C1 exon
chr10:84890244-84890377
Coord A exon
chr10:84895920-84896091
Coord C2 exon
chr10:84903295-84907307
Length
172 bp
Sequences
Splice sites
3' ss Seq
TTGCTTCTCTCCTTTGTCAGGCT
3' ss Score
8.29
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
CAACGTGGGGCTGACTGGCTCTGGGGAAGAGCTGTTGGCAGTGCTGGCGACAAGGATAGAGTGTGAGGCCTGGTGACAGGATGGCAGCGCAGAAGCCTCAGCGCTCAGGAGCTGCGGTCCTGGCTGCTCTGAGG
Seq A exon
GCTCTGCCACTGTAACTGTCACCAACAATAGGACAAACAGAACTCTTGAACTGCTTTGGCACAGCGCACACCCTTCTGTGAGCACGCTCATGGGAATGTCACATAAACTCAAGGACATTTTGTGAAACAACTGCCTGTGGCCTTCGAAAGCAGCAAGGCCATGACTGTCAAG
Seq C2 exon
GTCCCTGAAAGATAAAGGGTAAAGAGAAACAGACAGGCTGGCCAGGAAGCAACACAGTGCCTTCAGTGGTCACCAGGCTCCAAGCCCGTGAAATGCTGCAGAGCAAGGGAGATCCTGCAGAGGCTGCCAACTGTGAAACCAGAGGACAGACGGCTCTTGCAAAGTGGACACGTAGATTCTAGGACATCACAGACACAGATCTCTGCAGAATCACTGTAGCCATGAAGGGACAGCTGCAAATAAAAGTATGCAGTTGCAAAAACCAGTCCTGTAGGCACAGCCAGTTGCTTTTAAAGGTTCTAGATGGAGTCATCGGCAAAAAGCAGGCACCATGCATTTTGTTTCAACTGACACTGAAATGCTCATAGTATTTTTGTGAACAAGAAAGAGGAAATGAAGGCTGGGTGATCATCTTACTTGGGGCTAAGGGTGGTGGGTATAAGCCAAGGTACCTCCAAGTCAGCCTGGGCTCAGGACCAGGGACCACAGGCATCCTGGGT
VastDB Features
Vast-tools module Information
Secondary ID
Rn.63937_MULTIEX1-1/5=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATAGAGTGTGAGGCCTGGT
R:
ACTTTGCAAGAGCCGTCTGTC
Band lengths:
246-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]